Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p19
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    27   3.3  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.7  
SPBC3F6.03 |trr1|caf4|thioredoxin reductase Trr1|Schizosaccharom...    26   5.7  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   7.5  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   10.0 
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   10.0 

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 313 IPMAIDAADIVNYKQGIIKYCFDSGLNHAVLLVGYGVENNIP 188
           +P+++D  + + Y + ++K C    L   VL+V Y V+   P
Sbjct: 359 VPLSLDLMEKMTYTRAVVKECL--RLRPPVLMVPYRVKKAFP 398


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 5/105 (4%)
 Frame = -1

Query: 832  KYEINKFSDLSXDETIAKYTGLSLPTQTQNFCKVILL-DQPPGKGPLEFDWRRLNKVTSV 656
            +Y +    DL  DE + +  GL         C  +L  D    K  L  +  R   +   
Sbjct: 1982 QYVLKGHEDLRQDERVMQLFGL---------CNTLLTTDSETFKRRLNIE--RYTVIPLS 2030

Query: 655  KNQGMCGACWAFATLGSLESQFAIKHNELINLSEQQMI----DCD 533
             N G+ G      TL  L  +F  K N L+NL  + M+    DCD
Sbjct: 2031 PNSGLLGWVPHSDTLHFLIKEFRSKRNILLNLEHRMMLQMAPDCD 2075


>SPBC3F6.03 |trr1|caf4|thioredoxin reductase
           Trr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 107 TSVYVLLYPEKSVLSPIRAPSVFKGPIRNVVFNTI 211
           + VYVL+  +K   SPI A  +   P   V++NT+
Sbjct: 178 SKVYVLVRRDKLRASPIMAKRLLANPKVEVLWNTV 212


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 409 NSNKFLVQVKDCYRYIIVYEEKLKDLLR 326
           N+N +   +KDC+R ++    K+K++++
Sbjct: 198 NNNDWSSLMKDCFRDVVNNNRKMKEIIK 225


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 639 HIP*FFTLVTLLRRRQSNSRGPLPGGWSKSMT 734
           H+   + L   +R++ +  +GPLP GW   ++
Sbjct: 222 HLLEHYPLALSVRQQVAVEKGPLPAGWEMRLS 253


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 8   VYLITKYLRRYDYVPNSERLINDCSRRKFVSHTTSVYV 121
           ++ I K  R YD   NS   +N  + RKFV+  + VY+
Sbjct: 221 IHNIEKLWRDYDAFENS---VNRATARKFVAEKSPVYM 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,435,835
Number of Sequences: 5004
Number of extensions: 71589
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)