Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p18
         (180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    27   1.3  
U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm (myotubu...    25   5.4  
Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid...    25   9.4  
U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell m...    25   9.4  
U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell m...    25   9.4  
AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance prot...    25   9.4  

>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 119 EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHL 9
           E+F   ++E F    K V     NW+ND   +L + +
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQI 167


>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 7/33 (21%), Positives = 17/33 (51%)
 Frame = -2

Query: 128 NYCEQFITAIFEIFTLSSKIVVAVPVNWENDNL 30
           N+C   +TAI+ +  +    V+ +   W ++ +
Sbjct: 33  NFCVNLMTAIYTLILIMVAFVIEISPTWRSEKM 65


>AC006708-19|AAF60423.3|  588|Caenorhabditis elegans Mtm
           (myotubularin) family protein 1 protein.
          Length = 588

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = -2

Query: 179 KTYVNLVDESAFGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWE 42
           K Y   +DES + ++V +  E  + A+F + T    +++     W+
Sbjct: 338 KGYYKALDESKWLNHVQSILEGAVKAVFNVDTEKQSVLIHCSDGWD 383


>Z68214-4|CAA92447.1|  397|Caenorhabditis elegans Hypothetical
           protein C10C5.4 protein.
          Length = 397

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 45  PIDGHGHNDFTAERKNFENGRDKLFAIVNNV 137
           P+  H HN+F  E K F  G +    ++NN+
Sbjct: 365 PVRAHAHNEFLNE-KVFLRGVEIFETLINNL 394


>U42842-3|AAA83593.1|  449|Caenorhabditis elegans Intestinal acid
           phosphatase protein1 protein.
          Length = 449

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 179 KTYVNLVDESAFGSNVINYCEQ 114
           K++VN  D  A   N+ NYC Q
Sbjct: 184 KSFVNSADVQAVLGNLTNYCGQ 205


>U40427-5|AAP82652.1|  356|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform b protein.
          Length = 356

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   LCKCFKSTLKLSFSQLTGTATT 69
           LCKC KST+ +  +    T TT
Sbjct: 255 LCKCLKSTIPIKGASSHTTTTT 276


>U40427-4|AAA81470.2|  362|Caenorhabditis elegans Abnormal cell
           migration protein13, isoform a protein.
          Length = 362

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   LCKCFKSTLKLSFSQLTGTATT 69
           LCKC KST+ +  +    T TT
Sbjct: 261 LCKCLKSTIPIKGASSHTTTTT 282


>AF150958-1|AAD43178.1|  362|Caenorhabditis elegans guidance protein
           MIG-13 protein.
          Length = 362

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 4   LCKCFKSTLKLSFSQLTGTATT 69
           LCKC KST+ +  +    T TT
Sbjct: 261 LCKCLKSTIPIKGASSHTTTTT 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,106,877
Number of Sequences: 27780
Number of extensions: 60280
Number of successful extensions: 193
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)