Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p15
         (324 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    25   0.23 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    24   0.53 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   0.70 
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   0.92 
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    21   3.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.6  

>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 25.0 bits (52), Expect = 0.23
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 67  SHEMKTINCXXNNYNIXQSSPRTQYN----KVYFSIFIM 171
           S E K I+   NNYN   ++ +  YN    K+Y+  +I+
Sbjct: 309 SKERKIISSLSNNYNYNNNNYKYNYNNYNKKLYYKNYII 347


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 0.53
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  NCXXNNYNIXQSSPRTQYNKVYFSI 162
           N   NNYN   ++    Y K+Y++I
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLYYNI 355


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 0.70
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 88  NCXXNNYNIXQSSPRTQYNKVYFSI 162
           N   NNYN   ++    Y K+Y++I
Sbjct: 332 NNYNNNYNNYNNNNYNNYKKLYYNI 356


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 0.92
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +1

Query: 67  SHEMKTINCXXNNYNIXQSSPRTQYN-KVYFSIFIM 171
           S E K I+   NNY     +    YN K+Y+  +I+
Sbjct: 76  SKEPKIISSLSNNYKYSNYNNYNNYNKKLYYKNYII 111


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 100 NNYNIXQSSPRTQYNKV-YFSI 162
           NNYN   ++  T Y K+ Y++I
Sbjct: 96  NNYNNYNNNYNTNYKKLQYYNI 117


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/22 (27%), Positives = 12/22 (54%)
 Frame = +1

Query: 55  IEAESHEMKTINCXXNNYNIXQ 120
           +   SHE + +N   + YN+ +
Sbjct: 18  VNGGSHEKRLLNDLLDTYNVLE 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 50,455
Number of Sequences: 438
Number of extensions: 595
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7093251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)