Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p14
         (371 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)                    29   1.6  
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)                    29   1.6  
SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)              27   3.7  
SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)                       27   3.7  
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        27   4.9  
SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         27   6.4  
SB_34459| Best HMM Match : CagY_M (HMM E-Value=3.3)                    26   8.5  
SB_16110| Best HMM Match : Rota_NS6 (HMM E-Value=4.3)                  26   8.5  
SB_3507| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  
SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)                26   8.5  
SB_2524| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   8.5  

>SB_40445| Best HMM Match : rve (HMM E-Value=0.0008)
          Length = 467

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = -2

Query: 325 LSSPSSFFNRCHIWFDTPAPFFSRYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQN 146
           + S   + N+ H   D+     +  +T+T+ +G Q   G   H  ++Q      PP+ Q+
Sbjct: 202 MQSVVCYNNKLHKATDSMKLGANAINTETKPVGAQNMAG--GH-PRVQHATDHAPPRRQS 258

Query: 145 TLLLTARHSTHPTVAKERSDFVA 77
           T          PT++ E+SD  A
Sbjct: 259 TPAKVHAEGAAPTLSGEKSDHTA 281


>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
          Length = 699

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 258 LKNGAGVSNHMWHRLKNDDGDDKPCLNCVIYVA 356
           + NG  ++NH    +    G +K C+N V YVA
Sbjct: 63  MNNGRRIANHDMQGISFASGGEKDCVNMVGYVA 95


>SB_26245| Best HMM Match : Homeobox (HMM E-Value=1.7e-32)
          Length = 1168

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -2

Query: 247 TQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAK 98
           T TQ    Q+P    +H   + +P    PPK Q+    T+ H+T  T  +
Sbjct: 718 TTTQHFYNQSPLHHQNHNTTLLQPVTITPPKPQHNTSTTSHHNTTKTTTQ 767


>SB_700| Best HMM Match : Fer4 (HMM E-Value=0.04)
          Length = 202

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 137 INSQTFHTSDSSEGTKRFRRLPSFGFRLLQNRVCKIL 27
           I SQ+ + SD++E T +    P FG RL +   C I+
Sbjct: 90  IESQSENESDNAEETCKILATPPFGSRLRRCGYCAIM 126


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -1

Query: 146 HATINSQTFHTSDSSEGTKRFRRLPSF 66
           H T   + F T D  +G++ F R+P+F
Sbjct: 482 HCTQKRRGFQTCDKPQGSQSFPRIPTF 508


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 214 PG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVAKER 92
           PG  S   + Q+P +  PP+ +  L L+ RH T  + A+ER
Sbjct: 44  PGQLSQQSQSQQPQM-MPPQQKRELTLSVRHLTQMSSAEER 83


>SB_59035| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 182

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 111 RQ*RRNEAISSPALVWLSTVTKSC 40
           +Q  +N+A S P ++WLS V ++C
Sbjct: 102 KQAAQNDAQSFPLILWLSVVRQNC 125


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 99   FATVGCVECLAVNSSVFCNFGGLSMNGSWI 188
            F +     CL   S++ C +G +++ G WI
Sbjct: 1453 FVSKAASRCLPRGSALHCGYGFITLGGIWI 1482


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 255 RLKNGAGVSNHMWHRLKNDDGDD 323
           +LK+GA  ++H WH  +   GDD
Sbjct: 377 KLKDGAKTTDHNWHVHEKPVGDD 399


>SB_34459| Best HMM Match : CagY_M (HMM E-Value=3.3)
          Length = 192

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 40  TRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLI-VACSVT 156
           +R C  R+PNE   R   V ++LS  +N  ++   +C  T
Sbjct: 142 SRVCGGRRPNEAYERTARVHTILSIPFNALIVCPTSCGKT 181


>SB_16110| Best HMM Match : Rota_NS6 (HMM E-Value=4.3)
          Length = 216

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 40  TRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLI-VACSVT 156
           +R C  R+PNE   R   V ++LS  +N  ++   +C  T
Sbjct: 166 SRVCGGRRPNEAYERTARVHTILSIPFNALIVCPTSCGKT 205


>SB_3507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -2

Query: 124 HSTHPTVAKERSDFVACPRLAF-DCYKIVSA 35
           H TH  ++ ER+ FV   RLA+ DCY  V A
Sbjct: 28  HITHEILSTERT-FVEALRLAYEDCYGSVKA 57


>SB_54156| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
          Length = 1001

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -2

Query: 205 TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTVA 101
           T  IQ + + F   PP L++ L +  RHS HP VA
Sbjct: 433 TQEIQFVDDSF---PPVLKS-LYINPRHSEHPRVA 463


>SB_2524| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 367

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 40  TRFCNSRKPNEGRRRNRFVPSLLSDVWNVWLLI-VACSVT 156
           +R C  R+PNE   R   V ++LS  +N  ++   +C  T
Sbjct: 230 SRVCGGRRPNEAYERTARVHTILSIPFNALIVCPTSCGKT 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,947,780
Number of Sequences: 59808
Number of extensions: 215163
Number of successful extensions: 613
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)