Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p13
         (862 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   1.1  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   2.0  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    27   4.5  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   6.0  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    26   6.0  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    26   7.9  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   7.9  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   7.9  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 188 PISTGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQ-QKWFGFDETQFEILAAF 343
           P+S   IPP     TD ++  N    LIC    +Q    F FD  Q E L +F
Sbjct: 268 PLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESF 320


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -1

Query: 544 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 452
           +C Y+L+    Q +G +Y G T +  RR++QH+ +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 853 QLHGRAGDASRQATQHVPKRYLPNVGRQRGQF 758
           + H R+ DAS +A +   + + P++ R+R +F
Sbjct: 510 RFHSRSVDASPKAVRRESRSFFPSLTRKRSKF 541


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 771 NAVNSPAAHLTKNACQDSLTELAFQNETLRRFIFQQI 661
           N +   A +  K+A Q +    AF+N  LRR +F  I
Sbjct: 360 NPLERVAYYALKSAAQKAKLIAAFENRQLRRLVFSLI 396


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 248 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPV 138
           ++PY    NHE++  IPL+   N +I   P Q   P+
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSPL 423


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -3

Query: 248 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFSEPVYK 132
           ++PY     H  +E   L L+L      EP+ F  P YK
Sbjct: 760 EIPYLDPLEHMHIESSTLSLSLRKLEILEPKLFDSPYYK 798


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = -3

Query: 101 NNTTSNVSAGIIILISVVAF-IALFLLLYVIYYF 3
           N+T+ N  A + I+I  VAF + + L +++ +YF
Sbjct: 284 NHTSLNAGAIVGIVIGCVAFAVVMALCIFLYFYF 317


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +3

Query: 426  ALRKHLAPCLFECCFMRLLRLLVMPV 503
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,096
Number of Sequences: 5004
Number of extensions: 60319
Number of successful extensions: 180
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)