Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12p12
(866 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786... 32 0.68
11_06_0337 - 22454281-22456399,22458520-22459388 30 2.8
07_01_1203 - 11464142-11464324,11464422-11464484,11464685-114665... 30 2.8
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492... 29 3.6
11_06_0230 + 21528384-21528908,21529017-21529150,21530109-215301... 29 4.8
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 29 6.4
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909... 28 8.4
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450... 28 8.4
03_01_0245 + 1916718-1917443,1917534-1917719 28 8.4
>08_02_1041 -
23876849-23876959,23877853-23878046,23878621-23878691,
23878956-23879009,23879051-23879187
Length = 188
Score = 31.9 bits (69), Expect = 0.68
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Frame = -3
Query: 726 IRSVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI--DGFHDNI 604
+ ++T K + D+I +KV+ F ++E+E+ D DG + NI
Sbjct: 146 VEAITEKIENFSDKIDAKVEPIFTEIEKEFEDSTSNDGVNANI 188
>11_06_0337 - 22454281-22456399,22458520-22459388
Length = 995
Score = 29.9 bits (64), Expect = 2.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3
Query: 684 IKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 586
+KS V++ L +EY+ I G HD+IQY DE
Sbjct: 12 VKSLVNKLGSLLAQEYT-LISGVHDDIQYINDE 43
>07_01_1203 -
11464142-11464324,11464422-11464484,11464685-11466515,
11467240-11468036
Length = 957
Score = 29.9 bits (64), Expect = 2.8
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = -3
Query: 216 FNDSEKVL---YYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALY 46
F ++ K+L +Y+ S KN + L E ++ WK GF++ ++ K L+
Sbjct: 394 FQNTRKILSFSFYDMPSYLKNCLLH-LRIFPEDCLIEKESLIWKWIAEGFVHVEQGKGLF 452
Query: 45 -VKLHNVTSTLNKNVI 1
V T +NK++I
Sbjct: 453 EVGERYFTELINKSMI 468
>12_01_1017 -
10348198-10348326,10348412-10348532,10348746-10349275,
10349318-10349433,10349672-10349990,10350019-10350106,
10350194-10350639
Length = 582
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = -3
Query: 261 KQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKI 91
K+ + + + + S+ND +K L K + Y +E E+ W K+ NW +
Sbjct: 515 KEKIQILDSMRMDKSYNDKDKDLNNTIKGIEKFVQYARIEDGAENKWKKTKIINWPL 571
>11_06_0230 +
21528384-21528908,21529017-21529150,21530109-21530158,
21530194-21530726
Length = 413
Score = 29.1 bits (62), Expect = 4.8
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Frame = -3
Query: 282 DSVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKN-MIYKALEFTTESSWVKSNK 106
DS+ F E VQ SF+ YY+ S K M+Y L E W++ +
Sbjct: 346 DSIGFGPTDENEVVQNTRKILSFS------YYDMPSHLKTCMLY--LSIYPEDHWIEKDS 397
Query: 105 FNWKIFCNGFIYDKK 61
WK GFI++++
Sbjct: 398 LIWKWIAEGFIHEEQ 412
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 28.7 bits (61), Expect = 6.4
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = -3
Query: 348 IVPFAHEINDTGLYEYDVLAYVDSVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKN 169
I+ A + D E+ V+ DS+ F E VQ + SF+ YY+ S
Sbjct: 399 IITIASLLVDKPAREWSVI--YDSISFGTGDQNEAVQNMRKILSFS------YYHLPSYL 450
Query: 168 KN-MIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALY-VKLHNVTSTLNKNVI 1
K M+Y L E + + WK GF+++++ K L+ V +NK++I
Sbjct: 451 KTCMLY--LSIYPEDHLIYKDILIWKWIAEGFVHEEQDKGLFEVGERYFIELINKSMI 506
>12_02_0741 -
22690452-22690528,22690693-22690813,22690871-22690951,
22691048-22691096,22691324-22691409,22691494-22691571,
22691647-22691796,22691884-22691922,22692194-22692283,
22692568-22692630,22692722-22692791,22693109-22693155,
22693268-22693330,22693411-22693461,22693702-22693785,
22693932-22693996,22694322-22694378,22694452-22694569,
22694664-22694714,22694789-22694875,22694956-22695035,
22695962-22696127
Length = 590
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = +1
Query: 700 VVLARNASYRTRNVKHHENGFCQLRVHNLVNVHQLSGLFVHMTISNNRLGH 852
++ R+A +VK + FC + V N++N+H + L+ I N+ H
Sbjct: 229 LLACRSAQPLIGSVKEKLSQFCHVPVENILNIHDVPNLWHVPLILRNQKVH 279
>03_01_0612 -
4501595-4501619,4501752-4501906,4502051-4502092,
4502238-4502279,4502365-4502464,4502825-4502889,
4503140-4503217
Length = 168
Score = 28.3 bits (60), Expect = 8.4
Identities = 18/70 (25%), Positives = 37/70 (52%)
Frame = -3
Query: 687 RIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYT 508
R+K ++ E +L + +++ N++ ++ S+ GSVLK+K KIL D
Sbjct: 35 RLKEELAETSLRLRQMRGEELHRL--NVEQLQELEKSLESGLGSVLKTKSKKILDEIDGL 92
Query: 507 DKKSIETYEK 478
++K ++ E+
Sbjct: 93 ERKRMQLIEE 102
>03_01_0245 + 1916718-1917443,1917534-1917719
Length = 303
Score = 28.3 bits (60), Expect = 8.4
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = +3
Query: 300 RTRKVPCR*FREQTAQ*LC-YQSGCTQKIALGCCRSQIPASTRIP--PRSSR-CVCRPIG 467
RT K PC TA+ LC +S ++ +GC +S PA+ R P P + R C R G
Sbjct: 95 RTPKTPCT----PTARRLCGVRSRTPRRGQVGCFQSSAPAAARTPRTPTTQRACYVRGTG 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,599,824
Number of Sequences: 37544
Number of extensions: 403041
Number of successful extensions: 1085
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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