Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p12
         (866 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    31   0.010
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    31   0.010
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   4.8  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   4.8  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   4.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   6.4  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 222 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYV 43
           +S+ +  +   Y E SK ++      E + E+  + SN +N+K + N +     SK LY 
Sbjct: 270 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY----NSKKLYY 325

Query: 42  KLHNV 28
            + N+
Sbjct: 326 NIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 31.5 bits (68), Expect = 0.010
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -3

Query: 222 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYV 43
           +S+ +  +   Y E SK ++      E + E+  + SN +N+K + N +     SK LY 
Sbjct: 281 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY----NSKKLYY 336

Query: 42  KLHNV 28
            + N+
Sbjct: 337 NIINI 341


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 406 KSRLQHAYRHVAVVVFVDQLGQTVFFVSFNRLFI 507
           + R +   RH+  V ++D++ + VF  SF  L I
Sbjct: 452 RKRGEKIARHINSVSYIDKVARIVFPASFGLLNI 485


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 740 LNIMRTGFVNCVFIILLMYTNSLVCSST*QSRITVWDTS 856
           LN M +  V C  + LLM TN  +      +  T  DT+
Sbjct: 691 LNTMESHEVRCTAVFLLMKTNPPLSMLQRMAEFTKLDTN 729


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 737 MLNIMRTGFVNCVFIILLMYTNSLVC 814
           +L+++  GF+  + I L +  N LVC
Sbjct: 22  LLSVLLVGFLFLILIFLSVAGNILVC 47


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 2/72 (2%)
 Frame = -3

Query: 225 PSSFNDSEK-VLYYNEASKNKNMIYKA-LEFTTESSWVKSNKFNWKIFCNGFIYDKKSKA 52
           PSS  D+   V Y+ + ++N    +    E    +  + +      +FCN    D+ +  
Sbjct: 300 PSSVIDTNTGVDYFTQINRNGIACWDTNTELNPNTFILVAENNTTMVFCNDLSIDRSTNT 359

Query: 51  LYVKLHNVTSTL 16
           +YV   N    L
Sbjct: 360 MYVLSDNFQQLL 371


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 197 TFSESLNDDGNINFCTNSSNCLPSNSTLS 283
           T +  ++D G  N C+NS +   S S++S
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 197 TFSESLNDDGNINFCTNSSNCLPSNSTLS 283
           T +  ++D G  N C+NS +   S S++S
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -3

Query: 702 NDLRDRIKSKVDEQFDQLEREYSDKID 622
           ND R R+++ ++   ++ +REY  +++
Sbjct: 404 NDARRRVEAALEAVEEERQREYGIRVE 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 229,041
Number of Sequences: 438
Number of extensions: 4707
Number of successful extensions: 20
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28038087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)