Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p11
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   241   9e-65
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   240   1e-64
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   221   1e-58
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    30   0.46 
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.81 
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   3.3  
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    27   3.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   5.7  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   10.0 
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   10.0 
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   10.0 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   10.0 

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  241 bits (590), Expect = 9e-65
 Identities = 111/202 (54%), Positives = 147/202 (72%)
 Frame = -1

Query: 688 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 509
           PES+LK            +    +++S+  KK+  I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 508 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 329
           AR  GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 328 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 149
           + EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L K++I+ VEDLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195

Query: 148 FTVGEKFKYASNFLWPFKLNNP 83
           +TVG  FK A+NFLWPFKL++P
Sbjct: 196 YTVGPNFKQAANFLWPFKLSSP 217


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  240 bits (588), Expect = 1e-64
 Identities = 113/209 (54%), Positives = 151/209 (72%)
 Frame = -1

Query: 709 SKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 530
           SK+    PES+LK           R+    +++++  KK+  I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 529 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 350
           +I L R+AR  GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 349 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 170
           AT  ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L K++I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189

Query: 169 EDLIHEIFTVGEKFKYASNFLWPFKLNNP 83
           EDLIHEI+TVG  FK A+NF+WPF+L++P
Sbjct: 190 EDLIHEIYTVGPNFKQAANFIWPFQLSSP 218


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  221 bits (539), Expect = 1e-58
 Identities = 100/199 (50%), Positives = 140/199 (70%)
 Frame = -1

Query: 688 PESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 509
           PE +LK           R++  + ++ +  K ++E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 508 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 329
           A+N+G+ +VP E KL FVIRI G+  + PK+RKVL+L RL +INN VFVR NKA   MLR
Sbjct: 75  AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134

Query: 328 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLIHEI 149
           I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I +ED+IHEI
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEI 194

Query: 148 FTVGEKFKYASNFLWPFKL 92
           + VG  FK  + FLWPF L
Sbjct: 195 YNVGSHFKEVTKFLWPFTL 213


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = -1

Query: 295 NLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVE-DLIHEIFTVGEKFKYA 119
           N KSV  +    G   L+G +I I+ +  ++ R+       VE +L H++  +    K+A
Sbjct: 143 NAKSVERIAEVSGNYALAGAQI-ISPSDCMDGRVKAIKQKLVELELSHKVCVISYSAKFA 201

Query: 118 SNFLWPFK 95
           S F  PF+
Sbjct: 202 SGFFGPFR 209


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = -1

Query: 607 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 491
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +2

Query: 122 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 301
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 302 S 304
           S
Sbjct: 377 S 377


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 508  ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 389
            + N+G YY  G   +AFV  I G+ + SP++   LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 574 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 473
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 87  LFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSL 200
           L  L+GH   +  L +SP  +     SST   +C+W L
Sbjct: 318 LHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWDL 355


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +3

Query: 78  QXGLFNLKGHRKLLAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGI 233
           Q  LF+L G   L  ++ +  T+K SW     ++ +    L  +  ++++ I
Sbjct: 73  QIFLFSLFGSCMLFRFIKYPSTIKDSWNHHLEKLFIATCLLSISTFIDMLAI 124


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = -2

Query: 726 SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 553
           S+G+   ++C L+Q+ C    R  R   +   +    G+ LP +   K   G  S  R
Sbjct: 18  SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 62   FLRQPPXWIVQFEGPQEITRVLELFSNSEDLMDEVLN 172
            FL+  P   VQ +   E+ ++  LF NSED+M + L+
Sbjct: 1762 FLKNVPEITVQHQ--TEMLKMCSLFGNSEDVMIKQLS 1796


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,545
Number of Sequences: 5004
Number of extensions: 68010
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)