Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12p11
(832 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY089648-1|AAL90386.1| 252|Drosophila melanogaster RH04903p pro... 286 2e-77
AE014134-1774|AAF52868.1| 252|Drosophila melanogaster CG4897-PA... 286 2e-77
X15109-1|CAA33207.1| 239|Drosophila melanogaster ribosomal pro... 278 6e-75
AY071314-1|AAL48936.1| 257|Drosophila melanogaster RE33833p pro... 124 1e-28
BT029578-1|ABL75637.1| 257|Drosophila melanogaster IP16905p pro... 122 6e-28
BT029555-1|ABL75615.1| 257|Drosophila melanogaster IP16805p pro... 122 6e-28
BT021218-1|AAX33366.1| 257|Drosophila melanogaster RH63749p pro... 122 6e-28
AE014134-2146|AAF53155.2| 257|Drosophila melanogaster CG5317-PA... 122 6e-28
BT028802-1|ABI34183.1| 227|Drosophila melanogaster LP23547p pro... 93 3e-19
AY051415-1|AAK92839.1| 382|Drosophila melanogaster GH09360p pro... 30 3.4
AE014297-77|AAF52133.1| 382|Drosophila melanogaster CG9855-PA p... 30 3.4
AE014297-4130|AAF56715.1| 448|Drosophila melanogaster CG13972-P... 29 5.9
>AY089648-1|AAL90386.1| 252|Drosophila melanogaster RH04903p
protein.
Length = 252
Score = 286 bits (702), Expect = 2e-77
Identities = 140/227 (61%), Positives = 168/227 (74%), Gaps = 2/227 (0%)
Frame = -1
Query: 730 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKE 551
PV K +KKLPAVPES LK + LK+ + +K+E RAE+Y E
Sbjct: 4 PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63
Query: 550 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 371
Y E+ EI+L R A+ R +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64 YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123
Query: 370 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 191
VF++LNKAT+NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT N ++E++L
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLR 183
Query: 190 K-HNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDH 56
+ H I CVEDL+HEIFTVG FKYASNFLWPFKLN P W + +H
Sbjct: 184 QAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANH 230
>AE014134-1774|AAF52868.1| 252|Drosophila melanogaster CG4897-PA
protein.
Length = 252
Score = 286 bits (702), Expect = 2e-77
Identities = 140/227 (61%), Positives = 168/227 (74%), Gaps = 2/227 (0%)
Frame = -1
Query: 730 PVKGKEDSKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKE 551
PV K +KKLPAVPES LK + LK+ + +K+E RAE+Y E
Sbjct: 4 PVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNE 63
Query: 550 YRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNG 371
Y E+ EI+L R A+ R +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNG
Sbjct: 64 YIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNG 123
Query: 370 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 191
VF++LNKAT+NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT N ++E++L
Sbjct: 124 VFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLR 183
Query: 190 K-HNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDH 56
+ H I CVEDL+HEIFTVG FKYASNFLWPFKLN P W + +H
Sbjct: 184 QAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANH 230
>X15109-1|CAA33207.1| 239|Drosophila melanogaster ribosomal
protein protein.
Length = 239
Score = 278 bits (682), Expect = 6e-75
Identities = 135/217 (62%), Positives = 162/217 (74%), Gaps = 2/217 (0%)
Frame = -1
Query: 700 LPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIR 521
LPAVPES LK + LK+ + +K+E RAE+Y EY E+ EI+
Sbjct: 1 LPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLVRAEKYQNEYIKAEQREIK 60
Query: 520 LARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATV 341
L R A+ R +YVP EAKLAFV+RIRGIN+V+PKVRKVLQLFRLRQINNGVF++LNKAT+
Sbjct: 61 LRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATI 120
Query: 340 NMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHK-HNIICVED 164
NMLRIAEPYI WGYPNLKSVREL+YKRGF K + QR+PIT N ++E++L + H I CVED
Sbjct: 121 NMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVED 180
Query: 163 LIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDH 56
L+HEIFTVG FKYASNFLWPFKLN P W + +H
Sbjct: 181 LVHEIFTVGPNFKYASNFLWPFKLNTPTGGWRKKANH 217
>AY071314-1|AAL48936.1| 257|Drosophila melanogaster RE33833p
protein.
Length = 257
Score = 124 bits (299), Expect = 1e-28
Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 12/235 (5%)
Frame = -1
Query: 703 KLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 539
KLP SVLKH V ++R+ IKK+ F+RAE +V Y
Sbjct: 10 KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66
Query: 538 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 377
ER R+ + +A KL FV+R+ G + + R+ +
Sbjct: 67 ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRLAGKKIFDKTTADIFRTLRMGSRH 126
Query: 376 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 197
N VF+ K +LR+ EP++ +G P+L S+RELV+K+GFA++ G++ I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186
Query: 196 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDHSLCRXGE 35
L +IC+ED+IHEI TVG F + FL F L++P W + S R GE
Sbjct: 187 LGDKGVICLEDIIHEICTVGPNFAAVNEFLCAFTLSSPSNGWQKKVSVSYKRGGE 241
>BT029578-1|ABL75637.1| 257|Drosophila melanogaster IP16905p
protein.
Length = 257
Score = 122 bits (294), Expect = 6e-28
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Frame = -1
Query: 703 KLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 539
KLP SVLKH V ++R+ IKK+ F+RAE +V Y
Sbjct: 10 KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66
Query: 538 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 377
ER R+ + +A KL FV+R G + + R+ +
Sbjct: 67 ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126
Query: 376 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 197
N VF+ K +LR+ EP++ +G P+L S+RELV+K+GFA++ G++ I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186
Query: 196 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDHSLCRXGE 35
L +IC+ED+IHEI TVG F + FL F L++P W + S R GE
Sbjct: 187 LGDKGVICLEDIIHEICTVGPNFAAVNEFLCAFTLSSPSNGWQKKVSVSYKRGGE 241
>BT029555-1|ABL75615.1| 257|Drosophila melanogaster IP16805p
protein.
Length = 257
Score = 122 bits (294), Expect = 6e-28
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Frame = -1
Query: 703 KLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 539
KLP SVLKH V ++R+ IKK+ F+RAE +V Y
Sbjct: 10 KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66
Query: 538 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 377
ER R+ + +A KL FV+R G + + R+ +
Sbjct: 67 ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126
Query: 376 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 197
N VF+ K +LR+ EP++ +G P+L S+RELV+K+GFA++ G++ I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186
Query: 196 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDHSLCRXGE 35
L +IC+ED+IHEI TVG F + FL F L++P W + S R GE
Sbjct: 187 LGDKGVICLEDIIHEICTVGPNFAAVNEFLCAFTLSSPSNGWQKKVSVSYKRGGE 241
>BT021218-1|AAX33366.1| 257|Drosophila melanogaster RH63749p
protein.
Length = 257
Score = 122 bits (294), Expect = 6e-28
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Frame = -1
Query: 703 KLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 539
KLP SVLKH V ++R+ IKK+ F+RAE +V Y
Sbjct: 10 KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66
Query: 538 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 377
ER R+ + +A KL FV+R G + + R+ +
Sbjct: 67 ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126
Query: 376 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 197
N VF+ K +LR+ EP++ +G P+L S+RELV+K+GFA++ G++ I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186
Query: 196 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDHSLCRXGE 35
L +IC+ED+IHEI TVG F + FL F L++P W + S R GE
Sbjct: 187 LGDKGVICLEDIIHEICTVGPNFAAVNEFLCAFTLSSPSNGWQKKVSVSYKRGGE 241
>AE014134-2146|AAF53155.2| 257|Drosophila melanogaster CG5317-PA
protein.
Length = 257
Score = 122 bits (294), Expect = 6e-28
Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 12/235 (5%)
Frame = -1
Query: 703 KLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREI-----FKRAEQYVKEYRIK 539
KLP SVLKH V ++R+ IKK+ F+RAE +V Y
Sbjct: 10 KLPGKTVSVLKHRKRRILQDE---SVVTQKRNDRIKKRTATKNHHKFRRAESFVMGYLKA 66
Query: 538 ERDEIRLARQARNRGNYYVPGEA------KLAFVIRIRGINQVSPKVRKVLQLFRLRQIN 377
ER R+ + +A KL FV+R G + + R+ +
Sbjct: 67 ERTSKRIKQTILRTNVTEQSAKAADDSNPKLLFVMRHAGKKIFDKTTADIFRTLRMGSRH 126
Query: 376 NGVFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR 197
N VF+ K +LR+ EP++ +G P+L S+RELV+K+GFA++ G++ I SN++VE++
Sbjct: 127 NAVFMENTKENQLLLRVIEPFVVYGNPSLSSIRELVFKKGFARIDGKKTAIQSNTMVEQQ 186
Query: 196 LHKHNIICVEDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDHSLCRXGE 35
L +IC+ED+IHEI TVG F + FL F L++P W + S R GE
Sbjct: 187 LGDKGVICLEDIIHEICTVGPNFAAVNEFLCAFTLSSPSNGWQKKVSVSYKRGGE 241
>BT028802-1|ABI34183.1| 227|Drosophila melanogaster LP23547p
protein.
Length = 227
Score = 93.5 bits (222), Expect = 3e-19
Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 2/139 (1%)
Frame = +2
Query: 155 MDEVLNTDNVVFMEPL-LNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGVSPSNVRLGDT 331
MD++L+ N+V + L L++ V D + L+ L EST V L L +G++P +V LGD
Sbjct: 1 MDKILDALNLVRLTQLPLDHEVIGDGHALAVMLHESTLVDQLPHGLQIGIAPGDVGLGDA 60
Query: 332 *HIHSSLIQTYKHTIVYLAQSKQLQNFTDLR*NLVDTTDSDDKCQFGFPGNVVVATIACL 511
H+ L+Q +HT+V L Q++QLQN DL +LVDT D+DDK QFG G+V + +
Sbjct: 61 QHVDGGLVQLDEHTVVDLPQTEQLQNLADLGSHLVDTADTDDKGQFGLGGHVELVALLGQ 120
Query: 512 SG*SDFITF-LDAVFLDVL 565
+ D F LD + L +L
Sbjct: 121 ATQLDLALFRLDVLILVLL 139
>AY051415-1|AAK92839.1| 382|Drosophila melanogaster GH09360p
protein.
Length = 382
Score = 30.3 bits (65), Expect = 3.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 634 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 458
L++ LK++ +KKR I E+ ++ + + + ARQ R V P E + A
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369
Query: 457 VIRIRG 440
+ R RG
Sbjct: 370 ITRQRG 375
>AE014297-77|AAF52133.1| 382|Drosophila melanogaster CG9855-PA
protein.
Length = 382
Score = 30.3 bits (65), Expect = 3.4
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -1
Query: 634 LQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYV-PGEAKLAF 458
L++ LK++ +KKR I E+ ++ + + + ARQ R V P E + A
Sbjct: 310 LKIYLKQKQYGRRKKRRIVDYTEENIRNFMHRNNNSAAAARQERLPEQRPVPPAERRDAV 369
Query: 457 VIRIRG 440
+ R RG
Sbjct: 370 ITRQRG 375
>AE014297-4130|AAF56715.1| 448|Drosophila melanogaster CG13972-PA
protein.
Length = 448
Score = 29.5 bits (63), Expect = 5.9
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1
Query: 631 QVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRL 518
++ + + ++K +EI++ YV+EYR ++ +E RL
Sbjct: 367 ELRILEQKKLLQKHKEIYEERMTYVQEYRAQKEEEQRL 404
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,909,156
Number of Sequences: 53049
Number of extensions: 739038
Number of successful extensions: 1938
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1932
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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