Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p11
         (832 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   265   2e-71
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    31   1.0  
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   5.4  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    28   9.4  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  265 bits (650), Expect = 2e-71
 Identities = 124/219 (56%), Positives = 162/219 (73%), Gaps = 1/219 (0%)
 Frame = -1

Query: 709 SKKLPAVPESVLKHXXXXXXXXXXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 530
           +KK+P VPE+VLK             Q  +   +   +KK + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 529 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 350
            +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 349 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 170
           AT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICL 183

Query: 169 EDLIHEIFTVGEKFKYASNFLWPFKLNNP-XWWLAQEDH 56
           EDL HEI TVG  FK A+NFLWPFKLNNP   W  + +H
Sbjct: 184 EDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNH 222


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
 Frame = -1

Query: 268 YKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVEDLI----HEIFTVGEKFKYASNFLWP 101
           YKR  +K S     +   ++V+      ++I + ++I    H I  V ++F +    LW 
Sbjct: 417 YKRDSSKPSKPSHHVARRNVVQNSSFLFDLISLFNVIPPSLHIIMGVAQRFAFDYLILWA 476

Query: 100 FKLNNPXWWLAQEDHSLCRXGETLVTAKTK 11
            +L+NP   L + D    R  + +V  + +
Sbjct: 477 ARLDNPSMQLKRGDIKKTRISKAVVNDRAE 506


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = -2

Query: 597 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 427
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 299 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNF 412
           ++PS  RL    H H+ L Q +++ I    Q K++Q F
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFF 533


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +3

Query: 549 YSLTYCSALLKISLFFLMAEERLFSVTCNLLVRRASLLLRCLSTDSGTAGSFLLSSFPLT 728
           YS+     L+K+S +FL  + + +S   + ++ R  ++++ ++        FL+   PLT
Sbjct: 24  YSMPTVYILIKLSYYFLYRKNKCYSTDLHPVLFRQFMIMQ-IACFFNVCIKFLIFRIPLT 82

Query: 729 G 731
           G
Sbjct: 83  G 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,331,425
Number of Sequences: 27780
Number of extensions: 378227
Number of successful extensions: 1089
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)