Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12p09
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ... 200 1e-52
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.087
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 31 0.20
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha... 29 0.61
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 1.1
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 28 1.4
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.9
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 5.7
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 26 5.7
>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 274
Score = 200 bits (489), Expect = 1e-52
Identities = 109/211 (51%), Positives = 145/211 (68%), Gaps = 2/211 (0%)
Frame = -2
Query: 670 SGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGAD 491
SGSTVVY V+RL + + V IPT FQ+KQLI+ +GL LG+ + PN+DV+ DGAD
Sbjct: 40 SGSTVVYVVERLLTKPGVDS--VVFIPTGFQSKQLIVNNGLRLGDPDCYPNVDVSFDGAD 97
Query: 490 EVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYV 311
EVD N+ IKGGG CL QEK+IA +K+L+++AD K+S LG+ +KKGVPIEV+PMAY
Sbjct: 98 EVDDNLQCIKGGGACLFQEKLIAFLAKRLVIVADSRKNSHVLGEYWKKGVPIEVMPMAYA 157
Query: 310 PIKNKIISLYGGEIKLR-SAVAKAGPVVTDNGNFILDWMFANQNLDWEKVNNTIKLIPGV 134
I +++ L E KLR A KAGPVVTDNGNFI+D F + +++ IKL+ GV
Sbjct: 158 SILPQLVELGAIEPKLRMGAPGKAGPVVTDNGNFIIDAHFGLIK-NPKELFAKIKLLVGV 216
Query: 133 VETGLFVNMCCKAYFGQPEGNV-VERSVIEK 44
VE GLF +M YFG +G+V V+++ EK
Sbjct: 217 VEVGLFCDMISAVYFGSKDGSVTVKKASGEK 247
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 32.3 bits (70), Expect = 0.087
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 482 FKHDTYQRRGRVSVTRKNYCILFKEAYCYCGLYKRFCKTW 363
F DT RG + RKN +L + +CY GL ++ W
Sbjct: 1088 FNRDTECYRGSMQKGRKNIALLLRGFFCYYGLTTQYSFDW 1127
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 31.1 bits (67), Expect = 0.20
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 39 NHFSITDLSTTLPSGWPKYALQH 107
+HFS TDL T L WPKY H
Sbjct: 295 HHFSFTDLDTLL--NWPKYVFHH 315
>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 29.5 bits (63), Expect = 0.61
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 7/136 (5%)
Frame = -2
Query: 523 PNIDVTIDGADEVDSNMTLIK-GGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKK 347
P I ++ V+ T+++ G G L +IIAS K++I + Y + L ++
Sbjct: 22 PQITEWLNDEFSVNETSTILELGAGSGKLTPRIIASQPKEIIAVDTYVEMLDVLKKKF-P 80
Query: 346 GVPIEVIPMAYVPIKNKIISLYG-GE----IKLRSAVAKAGPVVTDNGNFILDWMFANQN 182
V V +P++++ + L G+ A+ + V+ NG L W + +
Sbjct: 81 NVDCRVGSAMAIPLEDESVDLVACGQCFHWFANEEALKEIYRVLKPNGKLALIWNIRDNS 140
Query: 181 LDW-EKVNNTIKLIPG 137
+ W EK + ++ G
Sbjct: 141 VPWVEKCSQLLEKCRG 156
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 432 FSCNRHPPPPLISVMFESTSSAPSI 506
F ++ PPPP+I+ FE T+S+ S+
Sbjct: 6 FIYDKPPPPPIINKPFEQTNSSASL 30
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.3 bits (60), Expect = 1.4
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = -2
Query: 526 NPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKK 347
NP+++ T EV S L K GG Q + +++ S I+ K SVK+ D K+
Sbjct: 170 NPDVNSTTSSPSEVGS---LDKAGGPLNQQNENLSAESDNTILQNGTRKSSVKMSDLGKR 226
Query: 346 GVPIEVIPMAYVPIKNKIISLY 281
+ V+ PI+ I S Y
Sbjct: 227 IASLPVVKRP--PIQFSISSDY 246
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 625 VESEKLKVTCIPTSFQAKQLIIKHGLNL 542
V+ + LKV C T F + ++++ GLNL
Sbjct: 211 VQPKHLKVACATTDFSMQNVLLQIGLNL 238
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 520 NIDVTIDGADEVDSNMTLIKGGGGCLLQ 437
N+D T+ G EV + M LI+ C+L+
Sbjct: 377 NLDYTLRGRPEVFAGMQLIEWANACVLK 404
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 419 LFKEAYCYCGLYKRFCKTW 363
LF ++ Y GL RFCK W
Sbjct: 291 LFLKSIHYIGLCSRFCKQW 309
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,352,337
Number of Sequences: 5004
Number of extensions: 72616
Number of successful extensions: 201
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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