Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12p09
(833 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015529-1|AAH15529.2| 311|Homo sapiens ribose 5-phosphate isom... 271 2e-72
AY050633-1|AAK95569.1| 237|Homo sapiens ribose 5-phosphate isom... 271 2e-72
AC096579-1|AAY24200.1| 177|Homo sapiens unknown protein. 224 3e-58
AC062029-2|AAY14778.1| 60|Homo sapiens unknown protein. 51 4e-06
X53051-1|CAA37218.1| 739|Homo sapiens precursor peptide protein. 37 0.10
M73255-1|AAA61270.1| 739|Homo sapiens vascular cell adhesion mo... 37 0.10
M60335-1|AAA61269.1| 739|Homo sapiens vascular cell adhesion mo... 37 0.10
M30257-1|AAA51917.1| 647|Homo sapiens VCAM1 protein. 37 0.10
BC085003-1|AAH85003.1| 739|Homo sapiens vascular cell adhesion ... 37 0.10
BC068490-1|AAH68490.2| 739|Homo sapiens vascular cell adhesion ... 37 0.10
BC017276-1|AAH17276.3| 739|Homo sapiens vascular cell adhesion ... 37 0.10
AK223266-1|BAD96986.1| 739|Homo sapiens vascular cell adhesion ... 37 0.10
AF536818-1|AAM96190.1| 739|Homo sapiens vascular cell adhesion ... 37 0.10
BC033821-1|AAH33821.1| 616|Homo sapiens chromosome 16 open read... 31 6.8
BC032400-1|AAH32400.1| 553|Homo sapiens C16orf44 protein protein. 31 6.8
AK022605-1|BAB14124.1| 616|Homo sapiens protein ( Homo sapiens ... 31 6.8
>BC015529-1|AAH15529.2| 311|Homo sapiens ribose 5-phosphate
isomerase A (ribose 5-phosphate epimerase) protein.
Length = 311
Score = 271 bits (665), Expect = 2e-72
Identities = 123/201 (61%), Positives = 159/201 (79%)
Frame = -2
Query: 670 SGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGAD 491
SGST+V+AVQR+AERV+ E L + CIPTSFQA+QLI+++GL L +L+ +P ID+ IDGAD
Sbjct: 104 SGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGAD 163
Query: 490 EVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYV 311
EVD+++ LIKGGGGCL QEKI+A + + IVIAD+ KDS LGD++ KG+PIEVIPMAYV
Sbjct: 164 EVDADLNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYV 223
Query: 310 PIKNKIISLYGGEIKLRSAVAKAGPVVTDNGNFILDWMFANQNLDWEKVNNTIKLIPGVV 131
P+ + +GG ++LR AV KAGPVVTDNGNFILDW F + W +VN IK+IPGVV
Sbjct: 224 PVSRAVSQKFGGVVELRMAVNKAGPVVTDNGNFILDWKFDRVH-KWSEVNTAIKMIPGVV 282
Query: 130 ETGLFVNMCCKAYFGQPEGNV 68
+TGLF+NM + YFG +G+V
Sbjct: 283 DTGLFINMAERVYFGMQDGSV 303
>AY050633-1|AAK95569.1| 237|Homo sapiens ribose 5-phosphate
isomerase protein.
Length = 237
Score = 271 bits (665), Expect = 2e-72
Identities = 123/201 (61%), Positives = 159/201 (79%)
Frame = -2
Query: 670 SGSTVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGAD 491
SGST+V+AVQR+AERV+ E L + CIPTSFQA+QLI+++GL L +L+ +P ID+ IDGAD
Sbjct: 30 SGSTIVHAVQRIAERVKQENLNLVCIPTSFQARQLILQYGLTLSDLDRHPEIDLAIDGAD 89
Query: 490 EVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAYV 311
EVD+++ LIKGGGGCL QEKI+A + + IVIAD+ KDS LGD++ KG+PIEVIPMAYV
Sbjct: 90 EVDADLNLIKGGGGCLTQEKIVAGYASRFIVIADFRKDSKNLGDQWHKGIPIEVIPMAYV 149
Query: 310 PIKNKIISLYGGEIKLRSAVAKAGPVVTDNGNFILDWMFANQNLDWEKVNNTIKLIPGVV 131
P+ + +GG ++LR AV KAGPVVTDNGNFILDW F + W +VN IK+IPGVV
Sbjct: 150 PVSRAVSQKFGGVVELRMAVNKAGPVVTDNGNFILDWKFDRVH-KWSEVNTAIKMIPGVV 208
Query: 130 ETGLFVNMCCKAYFGQPEGNV 68
+TGLF+NM + YFG +G+V
Sbjct: 209 DTGLFINMAERVYFGMQDGSV 229
>AC096579-1|AAY24200.1| 177|Homo sapiens unknown protein.
Length = 177
Score = 224 bits (548), Expect = 3e-58
Identities = 101/170 (59%), Positives = 132/170 (77%)
Frame = -2
Query: 577 AKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIV 398
A+QLI+++GL L +L+ +P ID+ IDGADEVD+++ LIKGGGGCL QEKI+A + + IV
Sbjct: 1 ARQLILQYGLTLSDLDRHPEIDLAIDGADEVDADLNLIKGGGGCLTQEKIVAGYASRFIV 60
Query: 397 IADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKLRSAVAKAGPVVTDNG 218
IAD+ KDS LGD++ KG+PIEVIPMAYVP+ + +GG ++LR AV KAGPVVTDNG
Sbjct: 61 IADFRKDSKNLGDQWHKGIPIEVIPMAYVPVSRAVSQKFGGVVELRMAVNKAGPVVTDNG 120
Query: 217 NFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQPEGNV 68
NFILDW F + W +VN IK+IPGVV+TGLF+NM + YFG +G+V
Sbjct: 121 NFILDWKFDRVH-KWSEVNTAIKMIPGVVDTGLFINMAERVYFGMQDGSV 169
>AC062029-2|AAY14778.1| 60|Homo sapiens unknown protein.
Length = 60
Score = 51.2 bits (117), Expect = 4e-06
Identities = 22/31 (70%), Positives = 27/31 (87%)
Frame = -2
Query: 670 SGSTVVYAVQRLAERVESEKLKVTCIPTSFQ 578
SGST+V+AVQR+AERV+ E L + CIPTSFQ
Sbjct: 30 SGSTIVHAVQRIAERVKQENLNLVCIPTSFQ 60
>X53051-1|CAA37218.1| 739|Homo sapiens precursor peptide protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>M73255-1|AAA61270.1| 739|Homo sapiens vascular cell adhesion
molecule-1 protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>M60335-1|AAA61269.1| 739|Homo sapiens vascular cell adhesion
molecule-1 protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>M30257-1|AAA51917.1| 647|Homo sapiens VCAM1 protein.
Length = 647
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 422 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 479
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 480 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 539
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 540 WIILKKK 546
>BC085003-1|AAH85003.1| 739|Homo sapiens vascular cell adhesion
molecule 1 protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>BC068490-1|AAH68490.2| 739|Homo sapiens vascular cell adhesion
molecule 1 protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>BC017276-1|AAH17276.3| 739|Homo sapiens vascular cell adhesion
molecule 1 protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>AK223266-1|BAD96986.1| 739|Homo sapiens vascular cell adhesion
molecule 1 isoform a precursor variant protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>AF536818-1|AAM96190.1| 739|Homo sapiens vascular cell adhesion
molecule 1 protein.
Length = 739
Score = 36.7 bits (81), Expect = 0.10
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Frame = -2
Query: 664 STVVYAVQRLAERVESEKLKVTCIPTSFQAKQLIIKHGLNLGELE-TNPNIDVTIDGADE 488
+TV+ + + E E + +TC+ F A +++ L GEL+ + N +T+
Sbjct: 514 TTVLVSPSSILE--EGSSVNMTCLSQGFPAPKILWSRQLPNGELQPLSENATLTLISTKM 571
Query: 487 VDSNMTLIKG---GGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
DS + L +G G + ++I + K I + + +SVK GD +P
Sbjct: 572 EDSGVYLCEGINQAGRSRKEVELIIQVTPKDIKLTAFPSESVKEGDTVIISCTCGNVPET 631
Query: 316 YVPIKNK 296
++ +K K
Sbjct: 632 WIILKKK 638
>BC033821-1|AAH33821.1| 616|Homo sapiens chromosome 16 open reading
frame 44 protein.
Length = 616
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 406 LIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKL 263
L V +DY +G R +E+I +Y+ +K + LYGGE+ L
Sbjct: 64 LAVCSDYFNSMFTIGMREAFQKEVELIGASYIGLKAVVDFLYGGELVL 111
>BC032400-1|AAH32400.1| 553|Homo sapiens C16orf44 protein protein.
Length = 553
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 406 LIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKL 263
L V +DY +G R +E+I +Y+ +K + LYGGE+ L
Sbjct: 64 LAVCSDYFNSMFTIGMREAFQKEVELIGASYIGLKAVVDFLYGGELVL 111
>AK022605-1|BAB14124.1| 616|Homo sapiens protein ( Homo sapiens
cDNA FLJ12543 fis, clone NT2RM4000590, weakly similar to
RING CANAL PROTEIN. ).
Length = 616
Score = 30.7 bits (66), Expect = 6.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -2
Query: 406 LIVIADYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISLYGGEIKL 263
L V +DY +G R +E+I +Y+ +K + LYGGE+ L
Sbjct: 64 LAVCSDYFNSMFTIGMREAFQKEVELIGASYIGLKAVVDFLYGGELVL 111
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,344,112
Number of Sequences: 237096
Number of extensions: 2425141
Number of successful extensions: 3746
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3742
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10482413384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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