Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p09
         (833 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3577|AAM68242.2|  280|Drosophila melanogaster CG30410-P...   286   3e-77
AY061165-1|AAL28713.1|  493|Drosophila melanogaster LD13176p pro...    29   5.9  
AE014296-2650|AAF49528.3|  493|Drosophila melanogaster CG5151-PA...    29   5.9  
AE014296-2649|AAS64987.1|  695|Drosophila melanogaster CG5151-PB...    29   5.9  
AY075351-1|AAL68210.1|  238|Drosophila melanogaster GH26134p pro...    29   7.8  
AE013599-3641|AAF47033.1|  238|Drosophila melanogaster CG5398-PA...    29   7.8  

>AE013599-3577|AAM68242.2|  280|Drosophila melanogaster CG30410-PA
           protein.
          Length = 280

 Score =  286 bits (701), Expect = 3e-77
 Identities = 133/204 (65%), Positives = 165/204 (80%), Gaps = 3/204 (1%)
 Frame = -2

Query: 670 SGSTVVYAVQRLAERV--ESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDG 497
           SGSTVVYAVQR+AERV  E E   + C+P+S+QA+ LI+ + LNLG+L+ NPNIDV IDG
Sbjct: 72  SGSTVVYAVQRIAERVWKEGELTDLICVPSSYQARHLILDYNLNLGDLDRNPNIDVAIDG 131

Query: 496 ADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMA 317
           ADEVD +M LIKGGGGCLLQEK++ASC+K  IV+ADYTK+S++LG+++ +GVPIEV PMA
Sbjct: 132 ADEVDRHMVLIKGGGGCLLQEKVVASCAKHFIVVADYTKNSIRLGEQWCRGVPIEVAPMA 191

Query: 316 YVPIKNKIISLYGGEIKLRSAVAKAGPVVTDNGNFILDWMF-ANQNLDWEKVNNTIKLIP 140
           YVPIK  I +L+GGE  LR A  KAGP+VTDNGNF+LDW F AN+  DW++VN  I LIP
Sbjct: 192 YVPIKLHIEALFGGEASLRMAKVKAGPIVTDNGNFLLDWKFIANREYDWDEVNRAITLIP 251

Query: 139 GVVETGLFVNMCCKAYFGQPEGNV 68
           GV+ETGLFVNM  K Y+G   G+V
Sbjct: 252 GVLETGLFVNMAHKCYYGMANGSV 275


>AY061165-1|AAL28713.1|  493|Drosophila melanogaster LD13176p
           protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 465 ISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISCFA*KEVGMQVTFSFSDSTRSASLC 644
           +S    S+ S P+ +T  F  +SS P+  P   ++  A       V+ S S S+ ++S C
Sbjct: 281 VSASSSSSKSKPNAITKFFSRISS-PKSPPSCTMTSVATASPASSVSMSSSASSLASSAC 339

Query: 645 TA 650
            +
Sbjct: 340 VS 341


>AE014296-2650|AAF49528.3|  493|Drosophila melanogaster CG5151-PA,
           isoform A protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 465 ISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISCFA*KEVGMQVTFSFSDSTRSASLC 644
           +S    S+ S P+ +T  F  +SS P+  P   ++  A       V+ S S S+ ++S C
Sbjct: 281 VSASSSSSKSKPNAITKFFSRISS-PKSPPSCTMTSVATASPASSVSMSSSASSLASSAC 339

Query: 645 TA 650
            +
Sbjct: 340 VS 341


>AE014296-2649|AAS64987.1|  695|Drosophila melanogaster CG5151-PB,
           isoform B protein.
          Length = 695

 Score = 29.5 bits (63), Expect = 5.9
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +3

Query: 465 ISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISCFA*KEVGMQVTFSFSDSTRSASLC 644
           +S    S+ S P+ +T  F  +SS P+  P   ++  A       V+ S S S+ ++S C
Sbjct: 483 VSASSSSSKSKPNAITKFFSRISS-PKSPPSCTMTSVATASPASSVSMSSSASSLASSAC 541

Query: 645 TA 650
            +
Sbjct: 542 VS 543


>AY075351-1|AAL68210.1|  238|Drosophila melanogaster GH26134p
           protein.
          Length = 238

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 504 IVTSIFGFVSSSPRLSPCLIISCFA*KEVGMQVTFSF 614
           +V  +FGFVS +   +PC+ ISC+    + ++V   +
Sbjct: 52  VVMHVFGFVSGA-HSNPCISISCYLMGYIALEVMMMY 87


>AE013599-3641|AAF47033.1|  238|Drosophila melanogaster CG5398-PA
           protein.
          Length = 238

 Score = 29.1 bits (62), Expect = 7.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 504 IVTSIFGFVSSSPRLSPCLIISCFA*KEVGMQVTFSF 614
           +V  +FGFVS +   +PC+ ISC+    + ++V   +
Sbjct: 52  VVMHVFGFVSGA-HSNPCISISCYLMGYIALEVMMMY 87


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,091,580
Number of Sequences: 53049
Number of extensions: 753905
Number of successful extensions: 1646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3962724636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)