Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p09
         (833 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical pr...   206   1e-53
Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical pr...    31   0.77 
Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    31   1.3  
Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical p...    30   1.8  
D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.        30   1.8  
AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    29   3.1  
Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical pr...    29   5.4  
Z78019-1|CAB01456.1|  662|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical ...    28   7.2  

>U10438-7|AAA19091.1|  251|Caenorhabditis elegans Hypothetical
           protein B0280.3 protein.
          Length = 251

 Score =  206 bits (504), Expect = 1e-53
 Identities = 102/206 (49%), Positives = 132/206 (64%), Gaps = 3/206 (1%)
 Frame = -2

Query: 670 SGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGA 494
           SGSTV Y V+ L +  ++  LK + C+PTSF  KQ +I+ GL + +L+++P +DV IDGA
Sbjct: 40  SGSTVKYLVEYLKQGFQNGSLKDIICVPTSFLTKQWLIESGLPVSDLDSHPELDVCIDGA 99

Query: 493 DEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIPMAY 314
           DEVD   T IKGGGGCL QEKI+ + +K   VIADY KDS  LGDRY   VPIEV+P+A 
Sbjct: 100 DEVDGQFTCIKGGGGCLAQEKIVQTAAKNFYVIADYLKDSKHLGDRY-PNVPIEVLPLAA 158

Query: 313 VPIKNKIISLYGGEIKLRSAVAKAGPVVTDNGNFILDWMFAN--QNLDWEKVNNTIKLIP 140
            P+   I    GG  +LR AV K GP+VTDNGNFI+DW F       DW  +   +   P
Sbjct: 159 QPLLRSIPRAEGGSCQLRQAVKKCGPIVTDNGNFIIDWQFEKNVSGRDWFAIQQRLANTP 218

Query: 139 GVVETGLFVNMCCKAYFGQPEGNVVE 62
           G+VETGLF+      +F   +G+V E
Sbjct: 219 GIVETGLFIGCVDAVFFAYSDGSVKE 244


>Z81064-1|CAB02962.2|  655|Caenorhabditis elegans Hypothetical
           protein F16B12.1 protein.
          Length = 655

 Score = 31.5 bits (68), Expect = 0.77
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 502 DGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIA 392
           +G  EV  N TL K GG CL   K+     K LI+I+
Sbjct: 466 EGNVEVFVNWTLTKSGGSCLSLMKLSVDVDKPLIIIS 502


>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/111 (23%), Positives = 51/111 (45%)
 Frame = +3

Query: 447 HPPPPLISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISCFA*KEVGMQVTFSFSDST 626
           +PPPPL+   F  T + P  +  +FG + ++  LS    I+    + +   VT   +   
Sbjct: 10  YPPPPLVGASFAKT-AIPYSICFVFGTLGNTAVLSYVFFIT----RSLKSSVTALGNTFI 64

Query: 627 RSASLCTA*TTVDPLLFSLIT*AVFQFIIIFLDYSDLLLSTHYITQMSTKV 779
              +LC     VD L+   I  ++   I+    + +L+   H++ ++S K+
Sbjct: 65  YIVALC----AVDLLVTVSIPFSLSYMILNNWVFGELVCKIHFMLELSNKM 111


>Z35719-8|CAA84801.1| 1521|Caenorhabditis elegans Hypothetical protein
            T04A8.14 protein.
          Length = 1521

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 187  QNLDWEKVNNTI--KLIPGVVETGLFVNMCCKAYFGQPEGNVVE 62
            Q++ + KV+      ++P V E GLF   CCK++     G + E
Sbjct: 1137 QSVQYRKVDKDAADSMLPDVGEDGLFTCPCCKSFTSSAPGGIQE 1180


>Z35663-17|CAA84737.1| 1521|Caenorhabditis elegans Hypothetical
            protein T04A8.14 protein.
          Length = 1521

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 187  QNLDWEKVNNTI--KLIPGVVETGLFVNMCCKAYFGQPEGNVVE 62
            Q++ + KV+      ++P V E GLF   CCK++     G + E
Sbjct: 1137 QSVQYRKVDKDAADSMLPDVGEDGLFTCPCCKSFTSSAPGGIQE 1180


>D14635-1|BAA03484.1| 1521|Caenorhabditis elegans EMB-5 protein.
          Length = 1521

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -2

Query: 187  QNLDWEKVNNTI--KLIPGVVETGLFVNMCCKAYFGQPEGNVVE 62
            Q++ + KV+      ++P V E GLF   CCK++     G + E
Sbjct: 1137 QSVQYRKVDKDAADSMLPDVGEDGLFTCPCCKSFTSSAPGGIQE 1180


>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 680 SYYLSSISVYNNILRLF*FTTQYSLHYTDVY*SKLT 787
           SY LS+   YN +L+   F+T  +L Y  VY  + T
Sbjct: 330 SYLLSTTGAYNILLKFTDFSTNLNLDYVTVYDGETT 365


>Z83238-7|CAB05797.1|  313|Caenorhabditis elegans Hypothetical
           protein T08G3.8 protein.
          Length = 313

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 44  FFYNRSFNNIAFWLAKICFTAHVHK*TCF 130
           F Y+ SF++I F +  IC  A  H  TC+
Sbjct: 263 FEYSGSFDSIFFIIRSICIDAQAHIITCY 291


>Z78019-1|CAB01456.1|  662|Caenorhabditis elegans Hypothetical
           protein ZK863.4 protein.
          Length = 662

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/59 (20%), Positives = 30/59 (50%)
 Frame = -2

Query: 289 SLYGGEIKLRSAVAKAGPVVTDNGNFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFV 113
           ++YG +   +  ++ A   V ++   ++D M    N+  +   + +KL+ G++   LF+
Sbjct: 403 AIYGKKAMQKKTLSSAHGGVEESPLMLMDPMDITHNISAKVTEDAVKLLNGLIRNALFI 461


>AF016675-5|AAB66134.1|  476|Caenorhabditis elegans Hypothetical
           protein T27B7.2 protein.
          Length = 476

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 217 NFILDWMFANQNLDWEKVNNTIKLIPGVVETGLFVNMCCKAYFGQ 83
           +F+  +MF +   D E V   IKL P  VE    +   C  Y G+
Sbjct: 298 HFVKKYMFTHNTYDSEIVEALIKLDPTDVELTYMIAQLCFEYAGK 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,401,825
Number of Sequences: 27780
Number of extensions: 406165
Number of successful extensions: 1032
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1029
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)