Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p09
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.86 
M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    24   1.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   3.5  
M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee homeobox-...    22   6.1  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   8.0  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.0 bits (52), Expect = 0.86
 Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -3

Query: 681 EKIIADPLLFMQYKDSLNALNQKN*K*PAYQP-PFKQSS**SNMDSTLENLKQI 523
           EKI+A+PL+   +K +L  +N+      ++QP   +Q S  ++++ T   + Q+
Sbjct: 684 EKILAEPLVKEHFKKALELMNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQM 737


>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 162 LTFSQSKFWFANIQSKIK 215
           LT +Q K WF N ++KIK
Sbjct: 59  LTEAQIKIWFQNKRAKIK 76


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -3

Query: 681 EKIIADPLLFMQYKDSLNALNQKN*K*PAYQ 589
           E  + DP+ +  YK  +N   Q     P YQ
Sbjct: 426 EVAVHDPVFYQLYKKVMNLYQQYQQSLPVYQ 456


>M29489-1|AAA27724.1|  109|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone E60. ).
          Length = 109

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 162 LTFSQSKFWFANIQSKIK 215
           L  +Q K WF N ++KIK
Sbjct: 59  LNEAQIKIWFQNKRAKIK 76


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 LTFSQSKFWFANIQSKIK 215
           LT  Q K WF N + K+K
Sbjct: 47  LTERQIKIWFQNRRMKLK 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,787
Number of Sequences: 438
Number of extensions: 5046
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)