Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p05
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.1  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    22   2.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   5.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    20   9.9  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 328 YLLKRYITLAIIQWRD 281
           Y + RY+ LA+I+W+D
Sbjct: 50  YEVFRYLELAMIRWKD 65


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 54  CKIAVVNTTRLRRHVGKI*SSP 119
           C   + + TRLRRH+  + + P
Sbjct: 8   CNKILTSLTRLRRHIQNVHTRP 29


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -2

Query: 257 WNASIFKKNYNNVKVASYIE 198
           W A   K    N KV SYI+
Sbjct: 371 WGAECGKYPNGNTKVGSYID 390


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 335 LNIFIETVYNFSDHTME 285
           +NIF+ ++    D TME
Sbjct: 63  VNIFVRSISKIDDVTME 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,785
Number of Sequences: 438
Number of extensions: 2257
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)