Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12p04
         (901 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY146752-1|AAO12067.1|  277|Anopheles gambiae odorant-binding pr...    26   1.4  
AY146751-1|AAO12066.1|  277|Anopheles gambiae odorant-binding pr...    26   1.4  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           25   2.4  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   3.1  
U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.         24   5.5  
U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.         24   5.5  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    24   7.2  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    24   7.2  
AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein p...    24   7.2  

>AY146752-1|AAO12067.1|  277|Anopheles gambiae odorant-binding
           protein AgamOBP35 protein.
          Length = 277

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 204 INRNATLRRQCPHLTLQFLNLFVETSIFLY*LSVFRSYLIT 326
           +N+ A  + +C H T  F   F  T ++ + L+VF+   +T
Sbjct: 233 LNKLACHKTRCEHATDVFSQCFGNTDLYKHFLAVFKDAAMT 273


>AY146751-1|AAO12066.1|  277|Anopheles gambiae odorant-binding
           protein AgamOBP36 protein.
          Length = 277

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +3

Query: 204 INRNATLRRQCPHLTLQFLNLFVETSIFLY*LSVFRSYLIT 326
           +N+ A  + +C H T  F   F  T ++ + L+VF+   +T
Sbjct: 233 LNKLACHKTRCEHATDVFSQCFGNTDLYKHFLAVFKDAAMT 273


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
 Frame = -3

Query: 779  QQRMMAELKKEPVINFKFECSVCFETYSQQSNDTCPFLIPT-------TCDHGFCFKCVI 621
            +    AEL+K  V+         FE +   +N   P+L+         TCD GF  K   
Sbjct: 915  EDHTFAELRKLEVLRLDGNRITSFEVWQLSAN---PYLVEIALANNLWTCDCGFVNKLRS 971

Query: 620  DLQSNAMNI 594
             LQSNA  I
Sbjct: 972  YLQSNADKI 980


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 18/86 (20%), Positives = 39/86 (45%)
 Frame = -3

Query: 500 KKTQERVPAVQQYKNIIKVLQERSVISVENSDNNCDINMENQAKIVALEAELKNEKNHSD 321
           ++ QE    + Q +  +K LQ+  + + +       +  E + +    E  L+ E  HS 
Sbjct: 737 ERLQEMTRKLHQRQQHMKKLQQELLTNEQQLQQLAGVVFEGETE----ETTLREELEHSR 792

Query: 320 QVTSENRQLIEENTRLNEQVQELQRQ 243
            + ++ ++ IEE     +QV+   +Q
Sbjct: 793 TILAKLQKGIEEEQAKLDQVRRTVQQ 818


>U42429-1|AAB54088.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 347 LKNEKNHSDQVTSENRQLIEENTRLNE 267
           LKNE N +  +T + RQ +     LNE
Sbjct: 513 LKNEFNENRYLTEKRRQTLSAELGLNE 539


>U42214-1|AAB58461.1|  596|Anopheles gambiae engrailed protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 347 LKNEKNHSDQVTSENRQLIEENTRLNE 267
           LKNE N +  +T + RQ +     LNE
Sbjct: 513 LKNEFNENRYLTEKRRQTLSAELGLNE 539


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 728 FECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVI 621
           F+C VC E++           I T C H FC +C +
Sbjct: 245 FKCYVCRESFVDP--------IVTKCKHYFCERCAL 272


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -3

Query: 728 FECSVCFETYSQQSNDTCPFLIPTTCDHGFCFKCVI 621
           F+C VC E++           I T C H FC +C +
Sbjct: 245 FKCYVCRESFVDP--------IVTKCKHYFCERCAL 272


>AB090812-1|BAC57899.1|  541|Anopheles gambiae gag-like protein
           protein.
          Length = 541

 Score = 23.8 bits (49), Expect = 7.2
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 371 KIVALEAELKNEKNHSDQVTSENRQLIEENTRLNEQVQEL 252
           K  +   EL+  K    Q+  +N ++ E+N RL EQ+  +
Sbjct: 85  KAASTTPELELLKATIQQLEEQNLEMKEQNFRLAEQITRM 124


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 838,748
Number of Sequences: 2352
Number of extensions: 16982
Number of successful extensions: 36
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 97160985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)