Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o24
         (116 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06869-1|CAA29993.1|  463|Drosophila melanogaster EF-1-alpha pro...    26   6.4  
M11744-1|AAA28526.1|  463|Drosophila melanogaster protein ( D.me...    26   6.4  
BT011039-1|AAR30199.1|  463|Drosophila melanogaster LP10071p pro...    26   6.4  
BT001873-1|AAN71645.1|  362|Drosophila melanogaster SD08285p pro...    26   6.4  
AY089522-1|AAL90260.1|  362|Drosophila melanogaster GM14559p pro...    26   6.4  
AE013599-1358|AAM68698.1|  463|Drosophila melanogaster CG8280-PB...    26   6.4  
AE013599-1357|AAF58608.1|  463|Drosophila melanogaster CG8280-PA...    26   6.4  

>X06869-1|CAA29993.1|  463|Drosophila melanogaster EF-1-alpha
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 114 GVIXAVXFKEGGGGKVS 64
           GVI AV FK+  GGKV+
Sbjct: 436 GVIKAVNFKDASGGKVT 452


>M11744-1|AAA28526.1|  463|Drosophila melanogaster protein (
           D.melanogaster 50 kDaprotein F1 gene, complete cds. ).
          Length = 463

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 114 GVIXAVXFKEGGGGKVS 64
           GVI AV FK+  GGKV+
Sbjct: 436 GVIKAVNFKDASGGKVT 452


>BT011039-1|AAR30199.1|  463|Drosophila melanogaster LP10071p
           protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 114 GVIXAVXFKEGGGGKVS 64
           GVI AV FK+  GGKV+
Sbjct: 436 GVIKAVNFKDASGGKVT 452


>BT001873-1|AAN71645.1|  362|Drosophila melanogaster SD08285p
           protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 114 GVIXAVXFKEGGGGKVS 64
           GVI AV FK+  GGKV+
Sbjct: 335 GVIKAVNFKDASGGKVT 351


>AY089522-1|AAL90260.1|  362|Drosophila melanogaster GM14559p
           protein.
          Length = 362

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 114 GVIXAVXFKEGGGGKVS 64
           GVI AV FK+  GGKV+
Sbjct: 335 GVIKAVNFKDASGGKVT 351


>AE013599-1358|AAM68698.1|  463|Drosophila melanogaster CG8280-PB,
           isoform B protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 114 GVIXAVXFKEGGGGKVS 64
           GVI AV FK+  GGKV+
Sbjct: 436 GVIKAVNFKDASGGKVT 452


>AE013599-1357|AAF58608.1|  463|Drosophila melanogaster CG8280-PA,
           isoform A protein.
          Length = 463

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -3

Query: 114 GVIXAVXFKEGGGGKVS 64
           GVI AV FK+  GGKV+
Sbjct: 436 GVIKAVNFKDASGGKVT 452


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,606,809
Number of Sequences: 53049
Number of extensions: 15294
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 24,988,368
effective HSP length: 19
effective length of database: 23,980,437
effective search space used: 455628303
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)