Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o23
(766 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein pr... 31 2.3
M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clo... 31 2.3
M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clo... 31 2.3
AY059435-1|AAL13341.1| 609|Drosophila melanogaster GH02003p pro... 31 2.3
AL024485-7|CAA19677.1| 1156|Drosophila melanogaster EG:155E2.4,F... 31 2.3
AL024485-5|CAA19679.1| 1116|Drosophila melanogaster EG:155E2.4,F... 31 2.3
AL024485-4|CAA19678.1| 1212|Drosophila melanogaster EG:155E2.4,F... 31 2.3
AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock... 31 2.3
AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA ... 31 2.3
AE014296-2294|AAF49806.1| 516|Drosophila melanogaster CG32130-P... 31 2.3
AE014296-2293|AAF49808.1| 516|Drosophila melanogaster CG32130-P... 31 2.3
AE014296-2292|AAF49807.1| 542|Drosophila melanogaster CG32130-P... 31 2.3
AE014296-2291|AAF49809.2| 609|Drosophila melanogaster CG32130-P... 31 2.3
AB029252-1|BAB15926.1| 143|Drosophila melanogaster period protein. 31 2.3
AB029251-1|BAB15925.1| 143|Drosophila melanogaster period protein. 31 2.3
AB029250-1|BAB15924.1| 143|Drosophila melanogaster period protein. 31 2.3
AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-P... 29 7.0
>X03636-1|CAA27285.1| 1127|Drosophila melanogaster per protein
protein.
Length = 1127
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1045 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1083
>M30114-2|AAA28752.1| 1122|Drosophila melanogaster biological clock
protein B protein.
Length = 1122
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1040 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1078
>M30114-1|AAA28754.1| 1218|Drosophila melanogaster biological clock
protein A protein.
Length = 1218
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1136 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1174
>AY059435-1|AAL13341.1| 609|Drosophila melanogaster GH02003p
protein.
Length = 609
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -3
Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 483
>AL024485-7|CAA19677.1| 1156|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1156
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1074 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1112
>AL024485-5|CAA19679.1| 1116|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1116
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1034 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1072
>AL024485-4|CAA19678.1| 1212|Drosophila melanogaster
EG:155E2.4,FBgn0003068;per protein.
Length = 1212
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1130 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1168
>AF033029-1|AAB87476.1| 1224|Drosophila melanogaster period clock
protein protein.
Length = 1224
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1142 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1180
>AE014298-440|AAF45804.1| 1218|Drosophila melanogaster CG2647-PA
protein.
Length = 1218
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 1136 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 1174
>AE014296-2294|AAF49806.1| 516|Drosophila melanogaster CG32130-PD,
isoform D protein.
Length = 516
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -3
Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 390
>AE014296-2293|AAF49808.1| 516|Drosophila melanogaster CG32130-PB,
isoform B protein.
Length = 516
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -3
Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 344 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 390
>AE014296-2292|AAF49807.1| 542|Drosophila melanogaster CG32130-PC,
isoform C protein.
Length = 542
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -3
Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 370 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 416
>AE014296-2291|AAF49809.2| 609|Drosophila melanogaster CG32130-PA,
isoform A protein.
Length = 609
Score = 30.7 bits (66), Expect = 2.3
Identities = 18/58 (31%), Positives = 36/58 (62%)
Frame = -3
Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEMLTKKLIE 81
+++++ K+ +Q DVL++M +V+Q+ T E K++ +LDEMLT+ L++
Sbjct: 437 TLNSINKIQDIQRDVLELMGKVEQFKG------TREE-----KEYAYLDEMLTRNLLK 483
>AB029252-1|BAB15926.1| 143|Drosophila melanogaster period protein.
Length = 143
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 67 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 105
>AB029251-1|BAB15925.1| 143|Drosophila melanogaster period protein.
Length = 143
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 67 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYPSFIK 105
>AB029250-1|BAB15924.1| 143|Drosophila melanogaster period protein.
Length = 143
Score = 30.7 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 766 DAPATSGDDNNNRKVVDANEDEYTVDGLKLKSKYVAYYK 650
D P +S + NN+K D+N + +DG S Y ++ K
Sbjct: 67 DPPCSSSNPANNKKYTDSNGNSDDMDGSSFSSFYSSFIK 105
>AE014297-4737|AAF57145.2| 1284|Drosophila melanogaster CG11339-PA
protein.
Length = 1284
Score = 29.1 bits (62), Expect = 7.0
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -2
Query: 276 SKKKHEHVRGRGDKAHSFAERRVGHDARSGPISKQRHARLHHRILKRAG 130
S +KH+H R S R G RSG ++H R H AG
Sbjct: 533 STRKHKHRHRRTSDNESELSRGSGRSGRSGRSHHRKHRRSHRHRRDSAG 581
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,388,331
Number of Sequences: 53049
Number of extensions: 692321
Number of successful extensions: 2198
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2198
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3520086471
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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