Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o23
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical p...    34   0.13 
Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical p...    34   0.13 
AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical...    32   0.39 
AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical ...    30   1.6  
U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    30   2.1  
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    30   2.1  

>Z77662-13|CAD54139.2|  257|Caenorhabditis elegans Hypothetical
           protein F47B8.9b protein.
          Length = 257

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 513 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 662
           LNG+S ++   T+ Y    NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 6   LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56


>Z77662-12|CAB01202.2|  338|Caenorhabditis elegans Hypothetical
           protein F47B8.9a protein.
          Length = 338

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 513 LNGSSTKMLRKTS-YNCLPNVYTCSYSFMLVSLLTYITKKSTSIFKHL*YA 662
           LNG+S ++   T+ Y    NV  C     L+S+ T+I  K  +I KH+ YA
Sbjct: 6   LNGASPEVATTTAIYAWWNNVAACLILIPLISISTFILLKGKTILKHMKYA 56


>AF022984-10|AAB69958.1|  358|Caenorhabditis elegans Hypothetical
           protein ZK488.1 protein.
          Length = 358

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 227 RLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 99
           R Q D+L +  +  Q L +D  DY ++ LN P K FD L +++
Sbjct: 275 RCQGDILKITEKFQQILANDLHDYYVDVLNMP-KYFDRLAKLM 316


>AC024817-9|ABQ13055.1|   97|Caenorhabditis elegans Hypothetical
           protein Y54G2A.52 protein.
          Length = 97

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
 Frame = +1

Query: 352 NPISCSRNW**YL*TCTFSICLYR---PAQV-SIRSVKFLKFCLYCCQIRACC 498
           NP++C  N+  Y   C    CL     PA + +I ++    FCL  C    CC
Sbjct: 43  NPLNCPSNFIYYFECCANECCLRTQVVPAVIIAIGAIFMTGFCLVSCVAYCCC 95


>U80452-6|AAB37858.1|  592|Caenorhabditis elegans Hypothetical
           protein C16C8.16 protein.
          Length = 592

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
 Frame = -3

Query: 257 TSVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDF-LDEMLTKKLIE 81
           TS+  + +++ +   +     E  Q    +  + +IE+LN+  K     L+E  TKK  E
Sbjct: 77  TSIKDLLEILEIIQKIFKKQDEFQQV--QENQNKSIENLNSELKTVKAELNE--TKKQQE 132

Query: 80  SNAMVFDETNKNLKFIHNSI 21
           S   + D ++KNLK I  SI
Sbjct: 133 SQEKLIDNSDKNLKLILESI 152


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 264 HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 163
           H  ++G G   H      +GHD  + P++  RHA
Sbjct: 514 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 547


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 264 HEHVRGRGDKAHSFAERRVGHDARSGPISKQRHA 163
           H  ++G G   H      +GHD  + P++  RHA
Sbjct: 511 HMMMQGGGGPVHGMYRGDMGHDPMTSPVNNHRHA 544


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,006,526
Number of Sequences: 27780
Number of extensions: 372096
Number of successful extensions: 1220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)