Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o23
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.4  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   2.4  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   5.4  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   7.2  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   9.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 344 VSAIQFRVQEIGDDIFERARFQFVFIGQRKFQ 439
           +S I+  +++I  +I+ER   ++++I   K+Q
Sbjct: 351 ISGIKI-IKQISSNIYERQNNEYIWIVSNKYQ 381


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 113 LDEMLTKKLIESNAMVFDETNKNLKFIHNSISICLNR 3
           LDE    KLIE +  VF   N+ ++ I  + +I L +
Sbjct: 189 LDEDTKNKLIEESKTVFILNNEIIRSIQGTGTIILKK 225



 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +3

Query: 285 LQQLYVSTIQFGLIYSSAQSYLQSNFVFKKLVMISLNV 398
           +  LY+  +  G+I    + ++Q  + FK+  M   N+
Sbjct: 126 IYHLYMGLLSGGIILRKKREFMQKIWPFKEYQMNGNNI 163


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = -1

Query: 355 DCRYD-CADEYIKPNCIVDTYNC 290
           +CR   C    ++P C+V  Y C
Sbjct: 241 ECRLKKCLTVGMRPECVVPEYQC 263


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +2

Query: 95  LLAFHLKNQTVCPARLRILWCNRACRC 175
           L  + LK++   P    I  CN+ C C
Sbjct: 454 LCPYTLKHKIRVPPGTPIYECNKRCNC 480


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 535 CCAKPRTTVCLTCTLARIL 591
           CC   R + C+T T A  L
Sbjct: 70  CCGAIRESHCMTITFASFL 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,147
Number of Sequences: 438
Number of extensions: 3986
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)