Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o21
(343 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein S25|Schizosacc... 52 3e-08
SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein S25|Sc... 52 3e-08
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 29 0.26
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 28 0.46
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 27 0.60
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 0.80
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 0.80
SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomy... 26 1.4
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc... 25 3.2
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 24 5.6
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 5.6
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 24 5.6
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 7.5
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 23 9.8
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 23 9.8
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 23 9.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 23 9.8
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 23 9.8
>SPBC3D6.15 |rps2501|rps25-1|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 88
Score = 51.6 bits (118), Expect = 3e-08
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = -2
Query: 186 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 37
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I+
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQ 70
>SPAC694.05c |rps2502|rps25-2, rps25|40S ribosomal protein
S25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 89
Score = 51.6 bits (118), Expect = 3e-08
Identities = 22/50 (44%), Positives = 38/50 (76%)
Frame = -2
Query: 186 LFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 37
+FDK +++ KEVP +K I+ +V+ +R+K+ GSLAR A+ +L E+G+I+
Sbjct: 21 VFDKSIIDRINKEVPAFKFISVSVLVDRMKINGSLARIAIRDLAERGVIQ 70
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 28.7 bits (61), Expect = 0.26
Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = +2
Query: 62 SMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFL 241
S+SA FNL+ GV ++ G S +F+ + + + W F + P+D FL
Sbjct: 139 SLSADTIGRRWAFNLTFLFTGVFAVIAGASP-NFASICVFDALWSFGVGGNLPVDSAIFL 197
Query: 242 -ALP 250
ALP
Sbjct: 198 EALP 201
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 27.9 bits (59), Expect = 0.46
Identities = 17/76 (22%), Positives = 30/76 (39%)
Frame = +2
Query: 17 MGVGLPXLMRPFSLSSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWL 196
+GVG L+ PFSL+S + + P + ++ Y G ++ Y
Sbjct: 309 LGVGWSILLLPFSLTSYAKNGWKNPSMIAMMVVGGVILIAYSGYEMFIAPYPSCPRRVMN 368
Query: 197 FNLSRTFPLDHFFFLA 244
+D F++LA
Sbjct: 369 RTFITAVIIDFFYYLA 384
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 27.5 bits (58), Expect = 0.60
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 158 SFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPP 256
SF Y L NN++L +S + ++ F++ PPP
Sbjct: 1008 SFIYGSLQNNSFLSRVSPSSLEENVFYIQHPPP 1040
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 27.1 bits (57), Expect = 0.80
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 284 KKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRC 186
K HR DP+ P RR GP + V + +C
Sbjct: 203 KVHRPNHFDPLVKLPTRRRGPGRRPVVALAMKC 235
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 27.1 bits (57), Expect = 0.80
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 177 YQTTPGCSTCHELFLWTTSSSWLCRHRILPSSSV 278
YQ TP HE WT SS L H + PS+ +
Sbjct: 156 YQLTPEFMAAHEEKTWTASS--LNSHNLTPSNVI 187
>SPAC1A6.04c |plb1||phospholipase B homolog Plb1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 613
Score = 26.2 bits (55), Expect = 1.4
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Frame = +2
Query: 50 FSLSSMSALLAREPRTFN--LSDTTAGVISLYCGTSLYSFSYVGLSNNT---WLFNLSRT 214
F S M+ + + FN LSD VIS G + Y F V LS+ T W N +
Sbjct: 203 FYSSIMNEVAEKANAGFNISLSDYWGRVISRTLGDTTYGFPNVSLSSITSQEWYRNANFP 262
Query: 215 FPLDHF 232
+P+ F
Sbjct: 263 YPIITF 268
>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 150
Score = 25.0 bits (52), Expect = 3.2
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 125 VISLYCGTSLYSFSYV-GLSNNTWLFNLSRTFPLDHFFFLALPPP 256
V+ + C +L F ++ G+ N T P +F+ L PPP
Sbjct: 37 VVVIICIAALIFFFFIIGIINRRRTKKGQATIPFTNFYPLTAPPP 81
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 179 SNNTWLFNLSRTFPLDHFFFLAL 247
S N+W+F L TF F+L+L
Sbjct: 316 SRNSWIFTLLLTFTQLTIFYLSL 338
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 5.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 237 SWLCRHRILPSSSVFFEAVW 296
+WL + ++PSSS F + W
Sbjct: 131 AWLEKQELVPSSSNFLNSFW 150
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 24.2 bits (50), Expect = 5.6
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +2
Query: 59 SSMSALLAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNT--WLFNLSRTFP 220
S+ S L+ EP+TF+ S T + IS SL LS++T L + S T P
Sbjct: 946 SASSNTLSTEPKTFSSSSTLSESISSINTNSLTVKPESSLSSSTTSGLTSSSSTIP 1001
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 23.8 bits (49), Expect = 7.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 171 TYEKLYKEVPQYKLITPAVVS 109
TY+K+Y E P K++ + S
Sbjct: 96 TYKKIYNEYPPTKILVQEIAS 116
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 23.4 bits (48), Expect = 9.8
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -3
Query: 296 PNSLKKHRRRRKDPVAAKPRRRSGPKEKFVTS*TTRCCLINPRMRN 159
PNS+K+ +R K P++ +S P+ +T +R + +RN
Sbjct: 153 PNSIKRQKRLFKSPISNCLNPKSDPE---ITQLLSRRLKLEKEVRN 195
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 331 KDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEV 227
K+ G EG G + +EE R+R + + E+
Sbjct: 62 KNKESPGLEGKGNLDDQGIDEENRVRLERMNDLEI 96
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 181 KQHLVVQLVTNFSFGPLLLLGFAAT 255
++++VVQ + F PL+LL FA++
Sbjct: 48 EENMVVQFLKQFVKDPLILLLFASS 72
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 23.4 bits (48), Expect = 9.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 137 YCGTSLYSFSYVGLSNNTWLFNLSRTFPLD 226
Y G+ SY L N TW ++L T+P +
Sbjct: 984 YDGSMPSKMSY-NLENRTWSYDLISTWPAE 1012
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 23.4 bits (48), Expect = 9.8
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -2
Query: 129 ITPAVVSERLKVRGSLARRALIEL 58
+ PA++ + ++ R SLA+ L+E+
Sbjct: 191 VLPAIIEQIIECRDSLAQEYLVEV 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,470,533
Number of Sequences: 5004
Number of extensions: 29205
Number of successful extensions: 119
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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