Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o21
(343 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein. 92 5e-19
BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25 p... 92 5e-19
AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens ... 31 0.94
BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 3... 29 5.0
Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,... 28 6.6
BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein pr... 28 6.6
BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein. 28 6.6
AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 3... 28 6.6
AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 3... 28 6.6
AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 3... 28 6.6
AB083591-1|BAB89304.1| 233|Homo sapiens putative G-protein coup... 28 6.6
>M64716-1|AAA16105.1| 125|Homo sapiens ribosomal protein protein.
Length = 125
Score = 91.9 bits (218), Expect = 5e-19
Identities = 50/67 (74%), Positives = 52/67 (77%)
Frame = -2
Query: 201 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 22
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVS-K 102
Query: 21 PMGQVIY 1
QVIY
Sbjct: 103 HRAQVIY 109
>BC004986-1|AAH04986.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 91.9 bits (218), Expect = 5e-19
Identities = 50/67 (74%), Positives = 52/67 (77%)
Frame = -2
Query: 201 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 22
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVS-K 102
Query: 21 PMGQVIY 1
QVIY
Sbjct: 103 HRAQVIY 109
>BC004294-1|AAH04294.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 91.9 bits (218), Expect = 5e-19
Identities = 50/67 (74%), Positives = 52/67 (77%)
Frame = -2
Query: 201 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 22
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVS-K 102
Query: 21 PMGQVIY 1
QVIY
Sbjct: 103 HRAQVIY 109
>BC003537-1|AAH03537.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 91.9 bits (218), Expect = 5e-19
Identities = 50/67 (74%), Positives = 52/67 (77%)
Frame = -2
Query: 201 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 22
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVS-K 102
Query: 21 PMGQVIY 1
QVIY
Sbjct: 103 HRAQVIY 109
>AB061844-1|BAB79482.1| 125|Homo sapiens ribosomal protein S25
protein.
Length = 125
Score = 91.9 bits (218), Expect = 5e-19
Identities = 50/67 (74%), Positives = 52/67 (77%)
Frame = -2
Query: 201 LNNQVLFDKPTYEKLYKEVPQYKLITPAVVSERLKVRGSLARRALIELREKGLIKXGSPT 22
LNN VLFDK TY+KL KEVP YKLITPAVVSERLK+RGSLAR AL EL KGLIK S
Sbjct: 44 LNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQELLSKGLIKLVS-K 102
Query: 21 PMGQVIY 1
QVIY
Sbjct: 103 HRAQVIY 109
>AK097034-1|BAC04932.1| 120|Homo sapiens protein ( Homo sapiens
cDNA FLJ39715 fis, clone SMINT2013228. ).
Length = 120
Score = 31.1 bits (67), Expect = 0.94
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Frame = +3
Query: 141 VGLPCTVSHTWVYQTTPGCSTCH---ELFLWTTSSSWLCRHRILPSSSVFFEAVWPKPSR 311
+GL T +HTW Y+ P CS C+ ++++ T H P S + V +P+
Sbjct: 20 LGLLHTHTHTWYYRCEPTCSACYTHTNIYIFKTEF-----HSYCPGWSAMRDLVSLQPAT 74
Query: 312 PSWAASL--NW 338
+ SL NW
Sbjct: 75 SASCLSLPSNW 85
>BC028615-1|AAH28615.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 59 SSMSALLAREPRT-FNLSDTTAGVISLYCGTSLYSFSYVGL 178
S M ++ + T NLS TA + SL+CG L+ + + GL
Sbjct: 298 SFMQVVIKKTSATSVNLSLLTADLYSLFCGLFLFHYKFSGL 338
>Z95326-1|CAI20271.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 101 NLSDTTAGVISLYCGTSLYSFSYVGL 178
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>BX640761-1|CAE45867.1| 228|Homo sapiens hypothetical protein
protein.
Length = 228
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 101 NLSDTTAGVISLYCGTSLYSFSYVGL 178
NLS TA + SL+CG L+ + + GL
Sbjct: 133 NLSLLTADLYSLFCGLFLFHYKFSGL 158
>BC114925-1|AAI14926.1| 408|Homo sapiens SLC35F1 protein protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 101 NLSDTTAGVISLYCGTSLYSFSYVGL 178
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL449196-1|CAI16177.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 101 NLSDTTAGVISLYCGTSLYSFSYVGL 178
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL136478-1|CAM28261.1| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 101 NLSDTTAGVISLYCGTSLYSFSYVGL 178
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AL133379-1|CAI19872.2| 408|Homo sapiens solute carrier family 35,
member F1 protein.
Length = 408
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 101 NLSDTTAGVISLYCGTSLYSFSYVGL 178
NLS TA + SL+CG L+ + + GL
Sbjct: 313 NLSLLTADLYSLFCGLFLFHYKFSGL 338
>AB083591-1|BAB89304.1| 233|Homo sapiens putative G-protein coupled
receptor protein.
Length = 233
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 69 VLFSPGNLGPLIFQIRQQV*LACTVGLPCTVSHT-WVYQTTP 191
+L SP I + L CT+GL C+ SH W+ T P
Sbjct: 181 LLLSPAGTSCYISLLGALAFLPCTLGLGCSFSHVGWLLWTQP 222
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,721,583
Number of Sequences: 237096
Number of extensions: 1326489
Number of successful extensions: 2803
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2802
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1910415606
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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