Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o21
(343 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071076-1|AAL48698.1| 117|Drosophila melanogaster RE14595p pro... 124 4e-29
AE014297-1258|AAF54605.2| 117|Drosophila melanogaster CG6684-PB... 124 4e-29
AE014297-1257|AAN13495.1| 117|Drosophila melanogaster CG6684-PA... 124 4e-29
U03289-1|AAA03464.1| 113|Drosophila melanogaster protein ( Dros... 111 2e-25
BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p pro... 27 4.8
AY052101-1|AAK93525.1| 607|Drosophila melanogaster SD04973p pro... 27 4.8
AE014134-2656|AAG22436.2| 379|Drosophila melanogaster CG4793-PB... 27 4.8
AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC... 27 4.8
AE013599-3005|AAF57474.1| 567|Drosophila melanogaster CG8929-PC... 27 4.8
AE013599-3004|AAF57475.2| 607|Drosophila melanogaster CG8929-PB... 27 4.8
AE013599-3003|AAF57473.2| 607|Drosophila melanogaster CG8929-PA... 27 4.8
AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA... 27 4.8
AY075429-1|AAL68245.1| 1384|Drosophila melanogaster LD47780p pro... 27 8.4
AE014135-123|AAX52511.1| 1384|Drosophila melanogaster CG31992-PH... 27 8.4
AE014135-122|AAX52510.1| 1384|Drosophila melanogaster CG31992-PG... 27 8.4
AE014135-121|AAN06509.1| 1384|Drosophila melanogaster CG31992-PF... 27 8.4
AE014135-120|AAN06508.1| 1384|Drosophila melanogaster CG31992-PE... 27 8.4
AE014135-119|AAN06507.1| 1384|Drosophila melanogaster CG31992-PD... 27 8.4
AE014135-118|AAF59324.2| 1384|Drosophila melanogaster CG31992-PC... 27 8.4
AE014135-117|AAF59322.2| 1384|Drosophila melanogaster CG31992-PB... 27 8.4
AE014135-116|AAF59323.2| 1384|Drosophila melanogaster CG31992-PA... 27 8.4
>AY071076-1|AAL48698.1| 117|Drosophila melanogaster RE14595p
protein.
Length = 117
Score = 124 bits (298), Expect = 4e-29
Identities = 65/97 (67%), Positives = 69/97 (71%)
Frame = -2
Query: 327 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 148
MPPKKDAK+SAKQPQ KLNNQVLFDK TYEKLYKE
Sbjct: 1 MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60
Query: 147 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 37
VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIK
Sbjct: 61 VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIK 97
>AE014297-1258|AAF54605.2| 117|Drosophila melanogaster CG6684-PB,
isoform B protein.
Length = 117
Score = 124 bits (298), Expect = 4e-29
Identities = 65/97 (67%), Positives = 69/97 (71%)
Frame = -2
Query: 327 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 148
MPPKKDAK+SAKQPQ KLNNQVLFDK TYEKLYKE
Sbjct: 1 MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60
Query: 147 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 37
VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIK
Sbjct: 61 VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIK 97
>AE014297-1257|AAN13495.1| 117|Drosophila melanogaster CG6684-PA,
isoform A protein.
Length = 117
Score = 124 bits (298), Expect = 4e-29
Identities = 65/97 (67%), Positives = 69/97 (71%)
Frame = -2
Query: 327 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 148
MPPKKDAK+SAKQPQ KLNNQVLFDK TYEKLYKE
Sbjct: 1 MPPKKDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKE 60
Query: 147 VPQYKLITPAVVSERLKVRGSLARRALIELREKGLIK 37
VP YKLITP+VVSERLK+RGSLA+RALIELREKGLIK
Sbjct: 61 VPAYKLITPSVVSERLKIRGSLAKRALIELREKGLIK 97
>U03289-1|AAA03464.1| 113|Drosophila melanogaster protein (
Drosophila melanogasterSevelin ribosomal protein homolog
gene, partial cds. ).
Length = 113
Score = 111 bits (268), Expect = 2e-25
Identities = 60/93 (64%), Positives = 64/93 (68%)
Frame = -2
Query: 315 KDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKEVPQY 136
KDAK+SAKQPQ KLNNQVLFDK TYEKLYKEVP Y
Sbjct: 1 KDAKSSAKQPQKTQKKKEGSGGGKAKKKKWSKGKVRDKLNNQVLFDKATYEKLYKEVPAY 60
Query: 135 KLITPAVVSERLKVRGSLARRALIELREKGLIK 37
KLITP+VVSERLK+RGSL +RALIELREKGLIK
Sbjct: 61 KLITPSVVSERLKIRGSLDKRALIELREKGLIK 93
>BT021362-1|AAX33510.1| 1313|Drosophila melanogaster LP14331p
protein.
Length = 1313
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 62 SMSALLAREPRTFNLSDTTAGVISLYCG-TSLYSFSYVGLS 181
++S LL + R F+L +T G+I L C S+ F+Y S
Sbjct: 134 AISTLLLDKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHS 174
>AY052101-1|AAK93525.1| 607|Drosophila melanogaster SD04973p
protein.
Length = 607
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 296 PNSLKKHRRRRKDPVAAKPRRRSGP 222
P+S + R R+ P++ PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152
>AE014134-2656|AAG22436.2| 379|Drosophila melanogaster CG4793-PB,
isoform B protein.
Length = 379
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 179 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 268
+NN L L+R LDH + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219
>AE014134-2655|AAN10922.1| 1022|Drosophila melanogaster CG4793-PC,
isoform C protein.
Length = 1022
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +2
Query: 179 SNNTWLFNLSRTFPLDHFF-FLALPPPDPSF 268
+NN L L+R LDH + LPPP+ +F
Sbjct: 189 ANNAALLFLARPLKLDHHIGLICLPPPNRNF 219
>AE013599-3005|AAF57474.1| 567|Drosophila melanogaster CG8929-PC,
isoform C protein.
Length = 567
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 296 PNSLKKHRRRRKDPVAAKPRRRSGP 222
P+S + R R+ P++ PRRRS P
Sbjct: 88 PHSRSRSRLRKSPPLSPPPRRRSPP 112
>AE013599-3004|AAF57475.2| 607|Drosophila melanogaster CG8929-PB,
isoform B protein.
Length = 607
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 296 PNSLKKHRRRRKDPVAAKPRRRSGP 222
P+S + R R+ P++ PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152
>AE013599-3003|AAF57473.2| 607|Drosophila melanogaster CG8929-PA,
isoform A protein.
Length = 607
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 296 PNSLKKHRRRRKDPVAAKPRRRSGP 222
P+S + R R+ P++ PRRRS P
Sbjct: 128 PHSRSRSRLRKSPPLSPPPRRRSPP 152
>AE013599-1857|AAF58271.3| 1313|Drosophila melanogaster CG8523-PA
protein.
Length = 1313
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 62 SMSALLAREPRTFNLSDTTAGVISLYCG-TSLYSFSYVGLS 181
++S LL + R F+L +T G+I L C S+ F+Y S
Sbjct: 134 AISTLLLDKVRQFSLQNTYIGIIMLVCSYLSITCFNYAAHS 174
>AY075429-1|AAL68245.1| 1384|Drosophila melanogaster LD47780p protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-123|AAX52511.1| 1384|Drosophila melanogaster CG31992-PH,
isoform H protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-122|AAX52510.1| 1384|Drosophila melanogaster CG31992-PG,
isoform G protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-121|AAN06509.1| 1384|Drosophila melanogaster CG31992-PF,
isoform F protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-120|AAN06508.1| 1384|Drosophila melanogaster CG31992-PE,
isoform E protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-119|AAN06507.1| 1384|Drosophila melanogaster CG31992-PD,
isoform D protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-118|AAF59324.2| 1384|Drosophila melanogaster CG31992-PC,
isoform C protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-117|AAF59322.2| 1384|Drosophila melanogaster CG31992-PB,
isoform B protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
>AE014135-116|AAF59323.2| 1384|Drosophila melanogaster CG31992-PA,
isoform A protein.
Length = 1384
Score = 26.6 bits (56), Expect = 8.4
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 77 LAREPRTFNLSDTTAGVISLYCGTSLYSFSYVGLSNNTWLFNLSRTFP 220
+AR P + N + A + + S + LS++TW FN ++ +P
Sbjct: 986 VARSPLSINSTPKDADIFANTGKNSPTDLPPLSLSSSTWSFNPNQNYP 1033
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,451,168
Number of Sequences: 53049
Number of extensions: 331072
Number of successful extensions: 973
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 24,988,368
effective HSP length: 75
effective length of database: 21,009,693
effective search space used: 798368334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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