Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o21
         (343 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   3.1  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   4.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    20   9.5  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 173 GLSNNTWLFNLSRTFP 220
           GLS+  W++  S T P
Sbjct: 542 GLSHGNWIYPASMTIP 557


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 25  WTTXFDETFFPKLD 66
           W     E +FPKLD
Sbjct: 263 WHEPIPEAYFPKLD 276


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 266 RKDPVAAKPRRRSGPKEKFVTS*TTRC 186
           R  P++ K   RSG +E+F+     RC
Sbjct: 79  RYQPISYKWITRSGTREQFIDM-VARC 104



 Score = 20.2 bits (40), Expect = 7.2
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = +3

Query: 231 SSSWLCRHR 257
           S+ W+C HR
Sbjct: 375 SNGWICEHR 383


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = -2

Query: 120 AVVSERLKVRG 88
           AVVS RLKV G
Sbjct: 559 AVVSPRLKVHG 569


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,008
Number of Sequences: 438
Number of extensions: 2297
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)