Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o19
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    27   3.2  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    26   7.3  

>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/60 (23%), Positives = 30/60 (50%)
 Frame = +3

Query: 183 IISSLVYFKQGQDF*YCEYILVSIVMTHYSHVCGEFWNISLNF*TKTKSFRIVFGTIHIS 362
           +I  + +F +G  +    Y+ + +  T+       FW+I++     T +F + FG I++S
Sbjct: 402 LIPGMFFFAKGSSYDDIPYVAIGV--TYLITQISLFWDINMLSSMITMTFLLTFGFINLS 459


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 287 FTTHMG-VMCHYYGNQDIFTILKILSLFE 204
           FTT    V+C Y GN  IF ++   + FE
Sbjct: 240 FTTKFSIVLCAYMGNSQIFPLVSSKNCFE 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,500
Number of Sequences: 5004
Number of extensions: 68209
Number of successful extensions: 121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)