Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o19
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846...    29   3.3  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    29   4.4  
08_01_0193 + 1599970-1600503,1601488-1601919,1602010-1602147,160...    29   4.4  
06_03_0508 - 21607706-21608863,21608943-21609090,21609411-216095...    29   4.4  

>08_02_1543 +
           27783063-27783182,27784321-27784485,27784577-27784686,
           27784771-27784876,27784952-27785050,27785450-27786607
          Length = 585

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 721 IRILFIYLQWMTEQFYFTFNFLVQIFIIL 807
           I + FI       QFY+ F FL  +FIIL
Sbjct: 459 IELFFILTSIWLHQFYYIFGFLFLVFIIL 487


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 721 IRILFIYLQWMTEQFYFTFNFLVQIFIIL 807
           I + FI       QFY+ F FL  +F+IL
Sbjct: 509 IELFFILTSIWLHQFYYIFGFLFLVFVIL 537


>08_01_0193 +
           1599970-1600503,1601488-1601919,1602010-1602147,
           1602532-1602600
          Length = 390

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -2

Query: 364 VLMWIVPKTILKDLVFV*KFSEIFQNSPHTWE*CVI 257
           +L WI+P  ++K    + +FS IFQ S  TW  C +
Sbjct: 184 ILWWILPCFVVKVTREMFRFSHIFQES--TWRSCAV 217


>06_03_0508 -
           21607706-21608863,21608943-21609090,21609411-21609523,
           21609612-21609705,21609841-21609950,21610093-21610257,
           21611660-21611800
          Length = 642

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 721 IRILFIYLQWMTEQFYFTFNFLVQIFIIL 807
           I + FI       QFY+ F FL  +FIIL
Sbjct: 516 IELFFILTSIWLNQFYYIFGFLFIVFIIL 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,111,612
Number of Sequences: 37544
Number of extensions: 320987
Number of successful extensions: 447
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)