Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o19
         (809 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023752-1|AAZ41760.1|  160|Drosophila melanogaster RH66170p pro...    31   1.9  
AF217228-1|AAF27630.1|  160|Drosophila melanogaster nucleolar pr...    31   1.9  
AE014296-2434|AAF49701.1|  160|Drosophila melanogaster CG5258-PA...    31   1.9  

>BT023752-1|AAZ41760.1|  160|Drosophila melanogaster RH66170p
           protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 807 EDYKDLYEEVKSEIKLLGHPL 745
           E+YKDLY+EVK E+  L  P+
Sbjct: 140 EEYKDLYDEVKEELSALNIPV 160


>AF217228-1|AAF27630.1|  160|Drosophila melanogaster nucleolar
           protein NHP2 protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 807 EDYKDLYEEVKSEIKLLGHPL 745
           E+YKDLY+EVK E+  L  P+
Sbjct: 140 EEYKDLYDEVKEELSALNIPV 160


>AE014296-2434|AAF49701.1|  160|Drosophila melanogaster CG5258-PA
           protein.
          Length = 160

 Score = 31.1 bits (67), Expect = 1.9
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -3

Query: 807 EDYKDLYEEVKSEIKLLGHPL 745
           E+YKDLY+EVK E+  L  P+
Sbjct: 140 EEYKDLYDEVKEELSALNIPV 160


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,811,534
Number of Sequences: 53049
Number of extensions: 606794
Number of successful extensions: 824
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)