Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o13
         (886 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0874 + 32646039-32646269,32646351-32646450,32647400-326474...   259   2e-69
05_06_0027 - 25029725-25030017,25030097-25030211,25030347-250305...   247   1e-65
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249...   116   3e-26
01_07_0240 - 42227132-42227245,42227332-42227394,42227484-422275...    67   2e-11
08_02_1023 - 23710825-23710950,23711037-23711120,23711367-237114...    40   0.002
03_05_0343 + 23313616-23314059                                         31   1.2  
07_03_0541 + 19254455-19254666,19255053-19255207,19255420-192554...    29   3.8  
02_02_0444 + 10340927-10341063,10341157-10341241,10341480-103415...    29   3.8  
12_01_0551 + 4446937-4447353,4449141-4450013,4451206-4451244,445...    29   6.6  
07_01_0404 + 3093851-3094051,3094622-3094948,3096685-3096798,309...    28   8.7  
07_01_0400 + 3048607-3048807,3049378-3049704,3051441-3051554,305...    28   8.7  

>01_06_0874 + 32646039-32646269,32646351-32646450,32647400-32647461,
            32647503-32647609,32647689-32647839,32647925-32648073,
            32648557-32648657,32648730-32648887,32648968-32649015,
            32649028-32649142,32649212-32649543
          Length = 517

 Score =  259 bits (634), Expect = 2e-69
 Identities = 140/286 (48%), Positives = 192/286 (67%), Gaps = 17/286 (5%)
 Frame = -1

Query: 886  IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
            IFVMD++IGQA   QA+AFK  V +G+VI+TK+DGHAKGGGALSAVAAT+SP+IFIGTGE
Sbjct: 223  IFVMDSSIGQAAFDQAQAFKQSVSVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGE 282

Query: 706  HIDDLEPFKTKPFIKKLLGMGDIEGLLDKV-XXXXXXXXXXXXXXXKHGQFTLRAMYEQF 530
            HID+ E F  KPF+ +LLGMGD  G +DK+                  G FTLR MYEQF
Sbjct: 283  HIDEFEVFDVKPFVSRLLGMGDWSGFMDKIHEVVPTDQQPELLQKLSEGTFTLRLMYEQF 342

Query: 529  QNIMKMGPFSQ----------------IMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMD 398
            QNI+KMGP  Q                +  M+PGFS +LM KG E+ES AK+K  MT+MD
Sbjct: 343  QNILKMGPIGQGSFLLRLSQHAFKSGLVFSMLPGFSSELMPKGHEKESQAKIKRYMTMMD 402

Query: 397  SMNEGELDNRDGAKLFSKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGL 218
            SM +GELD+ +  KL ++  +RI R+A+G+G   RDV D++ +Y + A +  KM G+K +
Sbjct: 403  SMTDGELDSTN-PKLMTE--SRILRIARGSGRPVRDVVDMLEEYKRLAKIWSKMKGLK-I 458

Query: 217  FKGGDMAKNVNQTQMVKLNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
             K G+M+  +++   V   Q M+K++ P++L+Q+GGM GL ++M+Q
Sbjct: 459  PKKGEMSA-LSRNMNV---QHMSKVLPPQMLKQIGGMGGLQSLMKQ 500


>05_06_0027 -
           25029725-25030017,25030097-25030211,25030347-25030504,
           25030582-25030682,25030846-25030994,25031089-25031239,
           25031329-25031482,25032249-25032321,25032446-25032676
          Length = 474

 Score =  247 bits (604), Expect = 1e-65
 Identities = 131/270 (48%), Positives = 177/270 (65%), Gaps = 1/270 (0%)
 Frame = -1

Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
           IFVMD +IGQA   QA+AFK    +G+VI+TKLDGHAKGGGALSAVAAT+SP++FIGTGE
Sbjct: 209 IFVMDGSIGQAAFDQAQAFKQSASVGAVIVTKLDGHAKGGGALSAVAATKSPVVFIGTGE 268

Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKV-XXXXXXXXXXXXXXXKHGQFTLRAMYEQF 530
           H+ D E F  KPF+ +LLGMGD+ GL++K+                  G FTLR  YE F
Sbjct: 269 HMQDFEVFDVKPFVSRLLGMGDLSGLVNKIKDAMPADQQPELMQRLIEGTFTLRVFYELF 328

Query: 529 QNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLF 350
           QN++ MGP  Q++ MIPGF  +LM KG ++ES AK+K  MTIMDSM   ELD+ +  KL 
Sbjct: 329 QNLLNMGPIGQVLSMIPGFRSELMPKGHDKESQAKIKRYMTIMDSMTNAELDSTN-PKLM 387

Query: 349 SKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMV 170
           S+  +RI RVA+G+G T +DV D++ +Y + A V  K+   K L K  D     N+  + 
Sbjct: 388 SE--SRIKRVARGSGRTMKDVTDMLEEYKRIAKVCSKLK--KKLPKNMDRNVMNNKDTLN 443

Query: 169 KLNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
            +N  + K    +LL Q+GG++ L ++M+Q
Sbjct: 444 TINNLIPK----QLLNQIGGVNPLQSVMKQ 469


>11_01_0334 +
           2495275-2495433,2495553-2495661,2496311-2496378,
           2496476-2496577,2496853-2497003,2497173-2497222,
           2497432-2497557,2497761-2497863,2498104-2498204,
           2498540-2498677,2498768-2498911,2499028-2499103,
           2499224-2499309,2499432-2499560,2500572-2500674,
           2500776-2500843,2500912-2501013,2501432-2501527,
           2501723-2501848,2502152-2502254,2502427-2502569,
           2503017-2503154,2503248-2503391,2503535-2503610,
           2503883-2503968,2504135-2504212,2505180-2505254,
           2505362-2505496,2506240-2506272,2507886-2507905,
           2508570-2508666,2508899-2509000,2510612-2510725
          Length = 1126

 Score =  116 bits (279), Expect = 3e-26
 Identities = 67/221 (30%), Positives = 118/221 (53%), Gaps = 1/221 (0%)
 Frame = -1

Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
           + V+DA  GQ   A    F  ++ I   I+TKLDG ++GG ALS    +  PI F+G GE
Sbjct: 277 LLVVDAMTGQEAAALVTTFNIEIGITGAILTKLDGDSRGGAALSVKEVSGKPIKFVGRGE 336

Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKV-XXXXXXXXXXXXXXXKHGQFTLRAMYEQF 530
            ++DLE F      +++LGMGD+   ++K                    +F      +Q 
Sbjct: 337 RMEDLELFYPDRMAQRVLGMGDVLSFVEKAQEVMRQEDAVELQKKIMSAKFDFNDFLKQS 396

Query: 529 QNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLF 350
           QN+ KMG  S+++GMIPG ++  ++    +E+  +L  + +++++M   E   R+  +L 
Sbjct: 397 QNVAKMGSMSRVVGMIPGMNK--VTPAQIREAEKRLAFVESMINAMTAEE---REKPELL 451

Query: 349 SKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGI 227
           ++   R  RVA+ +G +E++V  L+AQ  +  A ++K+ G+
Sbjct: 452 AESRDRRIRVAEESGKSEQEVSQLVAQLFQMRAQMQKLMGV 492



 Score = 96.7 bits (230), Expect = 2e-20
 Identities = 59/186 (31%), Positives = 96/186 (51%), Gaps = 1/186 (0%)
 Frame = -1

Query: 847  AQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPF 668
            A    F  ++ I   I+TKLDG ++GG ALS    +  PI F+G GE ++DLEPF     
Sbjct: 728  ALVSTFNVEIGITGAILTKLDGDSRGGAALSIKEVSGKPIKFVGRGERMEDLEPFYPDRM 787

Query: 667  IKKLLGMGDIEGLLDKV-XXXXXXXXXXXXXXXKHGQFTLRAMYEQFQNIMKMGPFSQIM 491
             +++LGMGD+   ++K                    +F      +Q Q I +MG FS+I+
Sbjct: 788  AQRILGMGDVLSFVEKAQEVMRQEDAEELQKKILSAKFNFNDFLKQTQAIAQMGSFSRII 847

Query: 490  GMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFSKQPTRITRVAQG 311
            GMIPG ++  ++    +E+   LK + ++++ M   E   R+  +L ++   R  RVA+ 
Sbjct: 848  GMIPGMNK--VTPAQIREAEKNLKFMESMINVMTPEE---RERPELLAESRERRIRVAKE 902

Query: 310  AGVTER 293
            +G  ER
Sbjct: 903  SGKNER 908


>01_07_0240 -
           42227132-42227245,42227332-42227394,42227484-42227552,
           42227716-42227798,42228056-42228176,42228335-42228372,
           42228932-42228990,42229076-42229149,42229241-42229753
          Length = 377

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 31/77 (40%), Positives = 46/77 (59%)
 Frame = -1

Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
           + V+D T G     QAR F D V +   ++TKLDG A+GG  +S V     P+ FIG GE
Sbjct: 299 LLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGE 358

Query: 706 HIDDLEPFKTKPFIKKL 656
            ++DL+PF  + F++ +
Sbjct: 359 GMEDLQPFDAEAFVEAI 375


>08_02_1023 - 23710825-23710950,23711037-23711120,23711367-23711492,
            23711593-23711712,23712046-23712153,23712243-23712395,
            23712505-23712600,23712716-23712800,23713278-23714268,
            23714870-23714915,23715806-23715964,23716516-23716651,
            23716734-23716900,23717366-23717696,23717827-23718062,
            23718326-23718514
          Length = 1050

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
 Frame = -1

Query: 886  IFVMDATIGQACEAQARAFKDKV-DIGSVIITKL-DG---------HAKGGGALSAVAAT 740
            +FV +A +G     Q   F  K+ D+ +V  T+L DG           K G ALS V  +
Sbjct: 961  LFVGEALVGNDAVDQLTKFNQKLADLSAVPTTRLIDGILLTKFDTIDDKVGAALSMVYIS 1020

Query: 739  QSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
             +P++F+G G+   DL+    K  +K LL
Sbjct: 1021 GAPVMFVGCGQSYTDLKKLNVKSIVKTLL 1049


>03_05_0343 + 23313616-23314059
          Length = 147

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 808 SVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEH 704
           +V +  + G+ +GGGA++AVAAT   +  +  G+H
Sbjct: 41  TVAVVVVIGYRRGGGAVTAVAATAMVMAVVVIGDH 75


>07_03_0541 +
           19254455-19254666,19255053-19255207,19255420-19255496,
           19255572-19255679
          Length = 183

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -1

Query: 553 LRAMYEQFQ-NIMKMGPFSQ-IMGMIPGFSQDLMSKGSEQESMAKLK 419
           +RA   Q + +I K+G   Q +MG + GF+QDL     + + +A LK
Sbjct: 11  MRAELAQVRLDIQKLGAARQELMGQVQGFTQDLARSAVDLQQVAALK 57


>02_02_0444 +
           10340927-10341063,10341157-10341241,10341480-10341537,
           10343738-10345885,10345943-10346388
          Length = 957

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = -1

Query: 202 MAKNVNQTQMVKLNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
           MAK++ +T M+ +N ++ K+   R     GG++ L  ++R+
Sbjct: 39  MAKHIEETNMMFMNGEVGKVGSDRRQLNYGGLNALPGVVRE 79


>12_01_0551 +
           4446937-4447353,4449141-4450013,4451206-4451244,
           4452339-4452581
          Length = 523

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/34 (35%), Positives = 23/34 (67%)
 Frame = -1

Query: 472 SQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDN 371
           SQDL+++   QE  +  +L++ +MDS+ +G  +N
Sbjct: 184 SQDLLARLQPQEPSSSAELVVELMDSITKGTNNN 217


>07_01_0404 +
           3093851-3094051,3094622-3094948,3096685-3096798,
           3096897-3097109,3097975-3098151,3098270-3100091,
           3100107-3100927,3101070-3101390
          Length = 1331

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 364 GAKLFSKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGL 218
           G  LF+     +T     A     +  DL A   +FAA + KMGGI+ L
Sbjct: 122 GRVLFTSDAALLTGQNDTAEKVRENAGDLTAWMARFAASMVKMGGIEVL 170


>07_01_0400 +
           3048607-3048807,3049378-3049704,3051441-3051554,
           3051653-3051865,3052731-3052907,3053026-3054847,
           3054863-3055683,3055826-3056146
          Length = 1331

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = -1

Query: 364 GAKLFSKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGL 218
           G  LF+     +T     A     +  DL A   +FAA + KMGGI+ L
Sbjct: 122 GRVLFTSDAALLTGQNDTAEKVRENAGDLTAWMARFAASMVKMGGIEVL 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,218,409
Number of Sequences: 37544
Number of extensions: 445091
Number of successful extensions: 1370
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)