Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o13
(886 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein. 434 e-121
U51920-1|AAC50994.1| 504|Homo sapiens signal recognition partic... 434 e-121
BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition part... 434 e-121
BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition part... 434 e-121
X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for ... 38 0.037
CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein. 38 0.037
BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition part... 38 0.037
BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition part... 38 0.037
BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition part... 38 0.037
AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens ... 34 0.79
AB065942-1|BAC06156.1| 279|Homo sapiens seven transmembrane hel... 31 4.2
AB065488-1|BAC05740.1| 282|Homo sapiens seven transmembrane hel... 31 4.2
>X86373-1|CAA60132.1| 504|Homo sapiens SRP 54 protein.
Length = 504
Score = 434 bits (1070), Expect = e-121
Identities = 207/269 (76%), Positives = 235/269 (87%)
Frame = -1
Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
++VMDA+IGQACEAQA+AFKDKVD+ SVI+TKLDGHAKGGGALSAVAAT+SPIIFIGTGE
Sbjct: 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
HIDD EPFKT+PFI KLLGMGDIEGL+DKV KHGQFTLR MYEQFQ
Sbjct: 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQ 337
Query: 526 NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
NIMKMGPFSQI+GMIPGF D MSKG+EQESMA+LK LMTIMDSMN+ ELD+ DGAK+FS
Sbjct: 338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFS 397
Query: 346 KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMVK 167
KQP RI RVA+G+GV+ RDV++L+ QYTKFA +VKKMGGIKGLFKGGDM+KNV+Q+QM K
Sbjct: 398 KQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAK 457
Query: 166 LNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
LNQQMAKMMDPR+L MGGM+GL +MMRQ
Sbjct: 458 LNQQMAKMMDPRVLHHMGGMAGLQSMMRQ 486
>U51920-1|AAC50994.1| 504|Homo sapiens signal recognition particle
protein.
Length = 504
Score = 434 bits (1070), Expect = e-121
Identities = 207/269 (76%), Positives = 235/269 (87%)
Frame = -1
Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
++VMDA+IGQACEAQA+AFKDKVD+ SVI+TKLDGHAKGGGALSAVAAT+SPIIFIGTGE
Sbjct: 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
HIDD EPFKT+PFI KLLGMGDIEGL+DKV KHGQFTLR MYEQFQ
Sbjct: 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQ 337
Query: 526 NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
NIMKMGPFSQI+GMIPGF D MSKG+EQESMA+LK LMTIMDSMN+ ELD+ DGAK+FS
Sbjct: 338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFS 397
Query: 346 KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMVK 167
KQP RI RVA+G+GV+ RDV++L+ QYTKFA +VKKMGGIKGLFKGGDM+KNV+Q+QM K
Sbjct: 398 KQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAK 457
Query: 166 LNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
LNQQMAKMMDPR+L MGGM+GL +MMRQ
Sbjct: 458 LNQQMAKMMDPRVLHHMGGMAGLQSMMRQ 486
>BC003389-1|AAH03389.1| 504|Homo sapiens signal recognition particle
54kDa protein.
Length = 504
Score = 434 bits (1070), Expect = e-121
Identities = 207/269 (76%), Positives = 235/269 (87%)
Frame = -1
Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
++VMDA+IGQACEAQA+AFKDKVD+ SVI+TKLDGHAKGGGALSAVAAT+SPIIFIGTGE
Sbjct: 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
HIDD EPFKT+PFI KLLGMGDIEGL+DKV KHGQFTLR MYEQFQ
Sbjct: 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQ 337
Query: 526 NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
NIMKMGPFSQI+GMIPGF D MSKG+EQESMA+LK LMTIMDSMN+ ELD+ DGAK+FS
Sbjct: 338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFS 397
Query: 346 KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMVK 167
KQP RI RVA+G+GV+ RDV++L+ QYTKFA +VKKMGGIKGLFKGGDM+KNV+Q+QM K
Sbjct: 398 KQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAK 457
Query: 166 LNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
LNQQMAKMMDPR+L MGGM+GL +MMRQ
Sbjct: 458 LNQQMAKMMDPRVLHHMGGMAGLQSMMRQ 486
>BC000652-1|AAH00652.1| 504|Homo sapiens signal recognition particle
54kDa protein.
Length = 504
Score = 434 bits (1070), Expect = e-121
Identities = 207/269 (76%), Positives = 235/269 (87%)
Frame = -1
Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
++VMDA+IGQACEAQA+AFKDKVD+ SVI+TKLDGHAKGGGALSAVAAT+SPIIFIGTGE
Sbjct: 218 VYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGE 277
Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
HIDD EPFKT+PFI KLLGMGDIEGL+DKV KHGQFTLR MYEQFQ
Sbjct: 278 HIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQ 337
Query: 526 NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
NIMKMGPFSQI+GMIPGF D MSKG+EQESMA+LK LMTIMDSMN+ ELD+ DGAK+FS
Sbjct: 338 NIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFS 397
Query: 346 KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMVK 167
KQP RI RVA+G+GV+ RDV++L+ QYTKFA +VKKMGGIKGLFKGGDM+KNV+Q+QM K
Sbjct: 398 KQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAK 457
Query: 166 LNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
LNQQMAKMMDPR+L MGGM+GL +MMRQ
Sbjct: 458 LNQQMAKMMDPRVLHHMGGMAGLQSMMRQ 486
>X06272-1|CAA29608.1| 638|Homo sapiens protein ( Human mRNA for
docking protein (signal recognition particle receptor).
).
Length = 638
Score = 38.3 bits (85), Expect = 0.037
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 814 IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
I +++TK D K G A+S T PI+F+GTG+ DL K + L+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>CR457025-1|CAG33306.1| 638|Homo sapiens SRPR protein.
Length = 638
Score = 38.3 bits (85), Expect = 0.037
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 814 IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
I +++TK D K G A+S T PI+F+GTG+ DL K + L+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>BC013583-1|AAH13583.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 38.3 bits (85), Expect = 0.037
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 814 IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
I +++TK D K G A+S T PI+F+GTG+ DL K + L+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>BC009110-1|AAH09110.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 38.3 bits (85), Expect = 0.037
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 814 IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
I +++TK D K G A+S T PI+F+GTG+ DL K + L+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>BC001162-1|AAH01162.1| 638|Homo sapiens signal recognition
particle receptor ('docking protein') protein.
Length = 638
Score = 38.3 bits (85), Expect = 0.037
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -1
Query: 814 IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
I +++TK D K G A+S T PI+F+GTG+ DL K + L+
Sbjct: 582 IDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALM 636
>AK128451-1|BAC87447.1| 368|Homo sapiens protein ( Homo sapiens
cDNA FLJ46594 fis, clone THYMU3045692. ).
Length = 368
Score = 33.9 bits (74), Expect = 0.79
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +1
Query: 10 SSYDCLNVICHPLTHPFHLSPVVAVASYCVNLTYHPFVVGGEDPSSLPFVGS-I*PFV 180
S++ C + HP HP + C++ + HP + PS PF+ S I PF+
Sbjct: 28 STHPCTHPFIHPCIHPSTHVSIHPSIHPCIHASIHPSIHPSVHPSMYPFIHSYIHPFI 85
>AB065942-1|BAC06156.1| 279|Homo sapiens seven transmembrane helix
receptor protein.
Length = 279
Score = 31.5 bits (68), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 7 ISSYDCLNVICHPLTHPFHLSPVVAV 84
+ +YDC ICHPL +P ++P + V
Sbjct: 84 VMAYDCFVAICHPLHYPVIVNPHLCV 109
>AB065488-1|BAC05740.1| 282|Homo sapiens seven transmembrane helix
receptor protein.
Length = 282
Score = 31.5 bits (68), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 7 ISSYDCLNVICHPLTHPFHLSPVVAV 84
+ +YDC ICHPL +P ++P + V
Sbjct: 150 VMAYDCFVAICHPLHYPVIVNPHLCV 175
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,922,323
Number of Sequences: 237096
Number of extensions: 2447463
Number of successful extensions: 12121
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12107
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11326166088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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