Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o13
         (886 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094660-1|AAM11013.1|  569|Drosophila melanogaster AT23778p pro...   447   e-125
AF160891-1|AAD46831.1|  508|Drosophila melanogaster BcDNA.GM0948...   447   e-125
AE014296-936|AAF50806.1|  508|Drosophila melanogaster CG4659-PA ...   447   e-125
AE014298-1556|AAF48002.2|  614|Drosophila melanogaster CG2522-PA...    37   0.032
L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic d...    32   0.92 
AE014297-2557|AAF55579.1|  232|Drosophila melanogaster CG7700-PA...    32   1.2  
AY094935-1|AAM11288.1|  232|Drosophila melanogaster RH54060p pro...    31   1.6  
AY089243-1|AAL89981.1|  550|Drosophila melanogaster AT03107p pro...    31   2.1  
AE014297-176|AAF52075.1|  550|Drosophila melanogaster CG14662-PA...    31   2.1  
AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA...    31   2.8  
AE014298-682|AAF45987.2| 1893|Drosophila melanogaster CG2861-PA,...    30   4.9  

>AY094660-1|AAM11013.1|  569|Drosophila melanogaster AT23778p protein.
          Length = 569

 Score =  447 bits (1101), Expect = e-125
 Identities = 214/269 (79%), Positives = 234/269 (86%)
 Frame = -1

Query: 886  IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
            IFVMDATIGQACEAQA+AFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE
Sbjct: 218  IFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 277

Query: 706  HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
            HIDDLEPFKTKPF+ KLLGMGDIEGL+DKV               KHG FT+R MYEQFQ
Sbjct: 278  HIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQ 337

Query: 526  NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
            NIMKMGPFSQ M MIPGFSQD M+KG EQESMA++K +MT+MDSM++ ELDNRDGAKLFS
Sbjct: 338  NIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFS 397

Query: 346  KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMVK 167
            KQP R  RVAQGAGV ER+VK+LIA YTKF+AVVKKMGG+KGLFK GDM KNVN TQM K
Sbjct: 398  KQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNVNPTQMAK 457

Query: 166  LNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
            LNQQ+AKM+DPR+LQQMGG+ G+ NMMRQ
Sbjct: 458  LNQQIAKMIDPRMLQQMGGVGGIQNMMRQ 486


>AF160891-1|AAD46831.1|  508|Drosophila melanogaster BcDNA.GM09489
            protein.
          Length = 508

 Score =  447 bits (1101), Expect = e-125
 Identities = 214/269 (79%), Positives = 234/269 (86%)
 Frame = -1

Query: 886  IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
            IFVMDATIGQACEAQA+AFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE
Sbjct: 218  IFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 277

Query: 706  HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
            HIDDLEPFKTKPF+ KLLGMGDIEGL+DKV               KHG FT+R MYEQFQ
Sbjct: 278  HIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQ 337

Query: 526  NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
            NIMKMGPFSQ M MIPGFSQD M+KG EQESMA++K +MT+MDSM++ ELDNRDGAKLFS
Sbjct: 338  NIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFS 397

Query: 346  KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMVK 167
            KQP R  RVAQGAGV ER+VK+LIA YTKF+AVVKKMGG+KGLFK GDM KNVN TQM K
Sbjct: 398  KQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNVNPTQMAK 457

Query: 166  LNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
            LNQQ+AKM+DPR+LQQMGG+ G+ NMMRQ
Sbjct: 458  LNQQIAKMIDPRMLQQMGGVGGIQNMMRQ 486


>AE014296-936|AAF50806.1|  508|Drosophila melanogaster CG4659-PA
            protein.
          Length = 508

 Score =  447 bits (1101), Expect = e-125
 Identities = 214/269 (79%), Positives = 234/269 (86%)
 Frame = -1

Query: 886  IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
            IFVMDATIGQACEAQA+AFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE
Sbjct: 218  IFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 277

Query: 706  HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
            HIDDLEPFKTKPF+ KLLGMGDIEGL+DKV               KHG FT+R MYEQFQ
Sbjct: 278  HIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLDGNDELLEKIKHGHFTIRDMYEQFQ 337

Query: 526  NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
            NIMKMGPFSQ M MIPGFSQD M+KG EQESMA++K +MT+MDSM++ ELDNRDGAKLFS
Sbjct: 338  NIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNRDGAKLFS 397

Query: 346  KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQTQMVK 167
            KQP R  RVAQGAGV ER+VK+LIA YTKF+AVVKKMGG+KGLFK GDM KNVN TQM K
Sbjct: 398  KQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNVNPTQMAK 457

Query: 166  LNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
            LNQQ+AKM+DPR+LQQMGG+ G+ NMMRQ
Sbjct: 458  LNQQIAKMIDPRMLQQMGGVGGIQNMMRQ 486


>AE014298-1556|AAF48002.2|  614|Drosophila melanogaster CG2522-PA
           protein.
          Length = 614

 Score = 37.1 bits (82), Expect = 0.032
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 814 IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
           I  +++TK D    K G A+S    T  PI+F+GTG+   DL+       +  L+
Sbjct: 559 IDGIVLTKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLM 613


>L14644-1|AAB88625.1| 2895|Drosophila melanogaster hyperplastic discs
            protein protein.
          Length = 2895

 Score = 32.3 bits (70), Expect = 0.92
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 463  LMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFSKQPTRI 329
            L      QE  A L LL+T  ++ N G  ++ DGA +F   PTR+
Sbjct: 2056 LQPNSKRQELFANLPLLVTT-NANNSGATNDGDGASIFDYTPTRL 2099


>AE014297-2557|AAF55579.1|  232|Drosophila melanogaster CG7700-PA
           protein.
          Length = 232

 Score = 31.9 bits (69), Expect = 1.2
 Identities = 17/68 (25%), Positives = 36/68 (52%)
 Frame = -1

Query: 844 QARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFI 665
           QAR+ ++++D+  V  +K+   + GGG+        SP++    GEH+ D    + +  +
Sbjct: 12  QARSLENEIDLKLVAFSKIGAGSGGGGSGGLGGVDTSPLL----GEHVFDSLSEEIEQML 67

Query: 664 KKLLGMGD 641
           +KL  + +
Sbjct: 68  EKLSSLNE 75


>AY094935-1|AAM11288.1|  232|Drosophila melanogaster RH54060p
           protein.
          Length = 232

 Score = 31.5 bits (68), Expect = 1.6
 Identities = 17/68 (25%), Positives = 35/68 (51%)
 Frame = -1

Query: 844 QARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFI 665
           QAR+ ++++D+  V  +K+     GGG+        SP++    GEH+ D    + +  +
Sbjct: 12  QARSLENEIDLKLVAFSKIGAGCGGGGSGGLGGVDTSPLL----GEHVFDSLSEEIEQML 67

Query: 664 KKLLGMGD 641
           +KL  + +
Sbjct: 68  EKLSSLNE 75


>AY089243-1|AAL89981.1|  550|Drosophila melanogaster AT03107p
           protein.
          Length = 550

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 734 TLCSCNSRKCTSSFCMSI*LCNDNRTNINFVFESPGLSFTSLTNCCIHH 880
           T+ S +  K +    + + +C    T   F     G +FTS +NCC HH
Sbjct: 354 TVASADLGKSSCQDGLLVEICESTCTTPTFFCVILGENFTSASNCCSHH 402


>AE014297-176|AAF52075.1|  550|Drosophila melanogaster CG14662-PA
           protein.
          Length = 550

 Score = 31.1 bits (67), Expect = 2.1
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 734 TLCSCNSRKCTSSFCMSI*LCNDNRTNINFVFESPGLSFTSLTNCCIHH 880
           T+ S +  K +    + + +C    T   F     G +FTS +NCC HH
Sbjct: 354 TVASADLGKSSCQDGLLVEICESTCTTPTFFCVILGENFTSASNCCSHH 402


>AE014297-1012|AAF54431.2| 2885|Drosophila melanogaster CG9484-PA
            protein.
          Length = 2885

 Score = 30.7 bits (66), Expect = 2.8
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 463  LMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFSKQPTRI 329
            L      QE  A L LL+T  ++ N G  ++ DG  +F   PTR+
Sbjct: 2063 LQPNSKRQELFANLPLLVTT-NANNSGATNDGDGGSIFDYTPTRL 2106


>AE014298-682|AAF45987.2| 1893|Drosophila melanogaster CG2861-PA,
           isoform A protein.
          Length = 1893

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 293 SFCDTCSLCNSCDTC 337
           S C TCS C+SC TC
Sbjct: 932 SSCTTCSTCSSCSTC 946


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,468,300
Number of Sequences: 53049
Number of extensions: 784323
Number of successful extensions: 1971
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1966
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4311772920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)