Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o13
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical p... 368 e-102
Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical pr... 368 e-102
AF047663-8|AAK84581.1| 114|Caenorhabditis elegans Hypothetical ... 34 0.16
AF068709-17|AAC19257.2| 287|Caenorhabditis elegans Serpentine r... 31 1.4
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 29 3.3
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 29 3.3
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 29 3.3
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 29 3.3
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 29 3.3
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 29 3.3
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 29 3.3
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 29 3.3
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 29 3.3
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 29 5.8
AL132876-16|CAD21672.2| 406|Caenorhabditis elegans Hypothetical... 28 7.7
AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRN... 28 7.7
>Z68161-12|CAA92301.1| 496|Caenorhabditis elegans Hypothetical
protein F21D5.7 protein.
Length = 496
Score = 368 bits (905), Expect = e-102
Identities = 179/272 (65%), Positives = 217/272 (79%), Gaps = 3/272 (1%)
Frame = -1
Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
+FVMDA+IGQACEAQARAF VD+ SVIITKLD HAKGGGALSAVA T+SP+IFIGTGE
Sbjct: 218 VFVMDASIGQACEAQARAFSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGE 277
Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
HIDD E FK K F++KLLGMGDI GL+D V K GQFTLR MYEQFQ
Sbjct: 278 HIDDFEIFKPKSFVQKLLGMGDIAGLVDMVNDIGIQDNKELVGRLKQGQFTLRDMYEQFQ 337
Query: 526 NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
NIMKMGPFSQIMGMIPGF + M+KG+EQES+ +LK +MT+MDSM++ ELD+ ++LF+
Sbjct: 338 NIMKMGPFSQIMGMIPGFGSEFMTKGNEQESVNRLKRMMTVMDSMSDKELDHPKASELFT 397
Query: 346 KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKG--GDM-AKNVNQTQ 176
K+P R+ RVA+G+G +++V+DL+AQY KF+ VVKK+G IKGLF G GD+ KN+N +
Sbjct: 398 KEPNRVARVARGSGSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGKNGDINPKNMNPAK 457
Query: 175 MVKLNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
M +LNQQMAKMMDPR+LQQMGGM GL NMM+Q
Sbjct: 458 MAQLNQQMAKMMDPRVLQQMGGMGGLQNMMQQ 489
>Z54271-9|CAA91040.1| 496|Caenorhabditis elegans Hypothetical protein
F21D5.7 protein.
Length = 496
Score = 368 bits (905), Expect = e-102
Identities = 179/272 (65%), Positives = 217/272 (79%), Gaps = 3/272 (1%)
Frame = -1
Query: 886 IFVMDATIGQACEAQARAFKDKVDIGSVIITKLDGHAKGGGALSAVAATQSPIIFIGTGE 707
+FVMDA+IGQACEAQARAF VD+ SVIITKLD HAKGGGALSAVA T+SP+IFIGTGE
Sbjct: 218 VFVMDASIGQACEAQARAFSQTVDVASVIITKLDSHAKGGGALSAVAVTKSPVIFIGTGE 277
Query: 706 HIDDLEPFKTKPFIKKLLGMGDIEGLLDKVXXXXXXXXXXXXXXXKHGQFTLRAMYEQFQ 527
HIDD E FK K F++KLLGMGDI GL+D V K GQFTLR MYEQFQ
Sbjct: 278 HIDDFEIFKPKSFVQKLLGMGDIAGLVDMVNDIGIQDNKELVGRLKQGQFTLRDMYEQFQ 337
Query: 526 NIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMNEGELDNRDGAKLFS 347
NIMKMGPFSQIMGMIPGF + M+KG+EQES+ +LK +MT+MDSM++ ELD+ ++LF+
Sbjct: 338 NIMKMGPFSQIMGMIPGFGSEFMTKGNEQESVNRLKRMMTVMDSMSDKELDHPKASELFT 397
Query: 346 KQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKG--GDM-AKNVNQTQ 176
K+P R+ RVA+G+G +++V+DL+AQY KF+ VVKK+G IKGLF G GD+ KN+N +
Sbjct: 398 KEPNRVARVARGSGSHQQEVRDLLAQYKKFSDVVKKIGSIKGLFNGKNGDINPKNMNPAK 457
Query: 175 MVKLNQQMAKMMDPRLLQQMGGMSGLHNMMRQ 80
M +LNQQMAKMMDPR+LQQMGGM GL NMM+Q
Sbjct: 458 MAQLNQQMAKMMDPRVLQQMGGMGGLQNMMQQ 489
>AF047663-8|AAK84581.1| 114|Caenorhabditis elegans Hypothetical
protein W09G12.5 protein.
Length = 114
Score = 33.9 bits (74), Expect = 0.16
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -1
Query: 814 IGSVIITKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFIKKLL 653
I +++TK D K G A+S T PI+F+G G+ DL + LL
Sbjct: 59 IDGIVLTKFDTIDDKVGAAVSMTYITGQPIVFVGCGQTYSDLRNLNVGAVVHSLL 113
>AF068709-17|AAC19257.2| 287|Caenorhabditis elegans Serpentine
receptor, class x protein24 protein.
Length = 287
Score = 30.7 bits (66), Expect = 1.4
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 212 FEQSFNSTHFFNDSRKFCVLCN*VFNIS-FCDTCSLCNSCDTCRLFRKQLGAVSIIQLTF 388
F ++ N +HF +FC + ++ FC T + + + L AVSII T
Sbjct: 86 FYENSNFSHFLVSLNRFCAMYLPLYYAPIFCVTKT--------KFYLTFLWAVSIIGCTA 137
Query: 389 IHRVHNCHKEF 421
I+ V NCH E+
Sbjct: 138 IYEVANCHLEY 148
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2121 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2175
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2176 DGENANR 2182
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2100 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2154
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2155 DGENANR 2161
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2156 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2210
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2211 DGENANR 2217
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2110 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2164
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2165 DGENANR 2171
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2110 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2164
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2165 DGENANR 2171
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2121 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2175
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2176 DGENANR 2182
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2110 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2164
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2165 DGENANR 2171
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2100 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2154
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2155 DGENANR 2161
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 29.5 bits (63), Expect = 3.3
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = -1
Query: 568 HGQFTLRAMYEQFQNIMKMGPFSQIMGMIPGFSQDLMSKGSEQESMAKLKLLMTIMDSMN 389
H AM E NI+ S ++ I + D M E +S A KLL+ IM+S +
Sbjct: 2156 HENQNTMAMQENGLNII----ISLVLNEIKPLADDHMELALEIKSQAS-KLLLAIMESRH 2210
Query: 388 EGELDNR 368
+GE NR
Sbjct: 2211 DGENANR 2217
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/80 (22%), Positives = 39/80 (48%)
Frame = -1
Query: 358 KLFSKQPTRITRVAQGAGVTERDVKDLIAQYTKFAAVVKKMGGIKGLFKGGDMAKNVNQT 179
+L +++ I R+ + AG+ E IAQ + ++VV + + G+ K + +
Sbjct: 292 ELTAEEFEHIRRINEMAGIDEPIQPPPIAQERRKSSVVSGLKNMFGVGKHDESELTTEEK 351
Query: 178 QMVKLNQQMAKMMDPRLLQQ 119
+ ++ MA+ MD +L +
Sbjct: 352 EHIRQMSLMAEKMDEEILDE 371
>AL132876-16|CAD21672.2| 406|Caenorhabditis elegans Hypothetical
protein Y105E8A.20 protein.
Length = 406
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -2
Query: 771 EEVHFRLLQLHKVLSYSLVLENILMT*SLSKQNRL*RNSLAWETL 637
EE + L+ +SY ++EN+++T + + NRL ++S W+ +
Sbjct: 291 EESRENCVDLYDEMSYFKIIENLMLT--MKEANRLFQSSQPWKEI 333
>AB096632-1|BAC76732.1| 500|Caenorhabditis elegans methionyl-tRNA
synthetase (mitochondrial)protein.
Length = 500
Score = 28.3 bits (60), Expect = 7.7
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -2
Query: 771 EEVHFRLLQLHKVLSYSLVLENILMT*SLSKQNRL*RNSLAWETL 637
EE + L+ +SY ++EN+++T + + NRL ++S W+ +
Sbjct: 385 EESRENCVDLYDEMSYFKIIENLMLT--MKEANRLFQSSQPWKEI 427
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,347,508
Number of Sequences: 27780
Number of extensions: 405966
Number of successful extensions: 1229
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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