Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o08
(811 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.36
SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31) 29 4.5
SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1) 29 5.9
SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.9
SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.8
SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 28 7.8
SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05) 28 7.8
>SB_21059| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1024
Score = 32.7 bits (71), Expect = 0.36
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Frame = +3
Query: 354 IRTLQLSFSKFTKASVSNSRLSILTIDGLSTEHNSTPSFSVN-KMGSPGMLVSLVSVTTN 530
+ L S +F + +NS LT++ L + + T + S +G ++VS+ SVTTN
Sbjct: 737 VTPLLFSQERFERFEHNNSLEIKLTVNILQNQGSRTMTSSYYLAIGILSIIVSITSVTTN 796
Query: 531 SILLVKLV 554
S++LV ++
Sbjct: 797 SLILVVII 804
>SB_21034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1101
Score = 31.5 bits (68), Expect = 0.84
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = -1
Query: 415 SREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQP 281
S E + +ALV +DN N +IAK G+S+ +T +Y K P
Sbjct: 183 SVEREIQALVGKSDDNTNKKIAKMDGSSQIPDTLLPSEYHIVKNP 227
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 29.5 bits (63), Expect = 3.4
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 184 NANRHVRRSATELDIEWLQ-PQLC*NRSNPYR--NLVVYLTRNHRCASCFCA*RRQTSWL 354
N H+ R A ++ + P C R Y+ N +++ ++N +C CA + +W
Sbjct: 1305 NCEHHLTRLALKIHRDRKSHPLNCYYRGRMYQTGNKIIHRSKNGKCYRAICAGGKIANWR 1364
Query: 355 SARC 366
SA C
Sbjct: 1365 SAVC 1368
>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
Length = 2122
Score = 29.1 bits (62), Expect = 4.5
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 4/177 (2%)
Frame = -1
Query: 790 KIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQI 611
+I YEL +LKN + ++ + ++++++SKY + L Q L + A T I
Sbjct: 1889 EINDRYELQIAELKNDNEIKQDKIEQLEISISKYENEMRDLRERQSLPQ---EHASTTLI 1945
Query: 610 AAVVFSTLAFIHNRFHPLVTNFTN-KMEFVVTETNDTSI-PGEPILFTENEGVLLCS--V 443
V R H + ++T+ +++ + SI G+ + TE+E L S
Sbjct: 1946 FDV--DKQRHTQQRPHSMYVSYTDVSSRKELSDISSISIEKGKDVKRTESERKSLDSSKY 2003
Query: 442 DRPSIVKMLSREFDTEALVNFENDNCNVRIAKTFGASKRKNTTRSDDYESNKQPDYD 272
D+ + E D + + + + R+ S+ KN S Y S D D
Sbjct: 2004 DQRESTRRNETELDKDRFASRSSSRYSSRVTSDQDISRDKNRETS-RYSSRSTRDTD 2059
>SB_15981| Best HMM Match : Defensin_2 (HMM E-Value=1.1)
Length = 890
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = -1
Query: 724 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 566
+T++ LAL Y E+T LLE+ N+ D + + F S L + RF
Sbjct: 753 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 812
Query: 565 -HPLVTNFTNKMEFVVTETND 506
PL T+ T + FV+ ++
Sbjct: 813 IQPLGTSPTVTLRFVIPPVDE 833
>SB_11728| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 521
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Frame = -1
Query: 724 ETLKIKLALSKYMAMLSTLEMTQPLLEIFRNKADTRQIAAVVF-------STLAFIHNRF 566
+T++ LAL Y E+T LLE+ N+ D + + F S L + RF
Sbjct: 229 DTVEQSLALHVYGVEEPGTEITVDLLEVLHNRLDDATLEVISFMLARNPGSKLTYADVRF 288
Query: 565 -HPLVTNFTNKMEFVVTETND 506
PL T+ T + FV+ ++
Sbjct: 289 IQPLGTSPTVTLRFVIPPVDE 309
>SB_38804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 150 YCKSLTDHSLFTNKLRSTMSTKTSNLLLS 64
YCK D +LF +K+ T +KTS +L S
Sbjct: 188 YCKVEKDLNLFCSKILPTRDSKTSKILTS 216
>SB_51105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1280
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 150 YCKSLTDHSLFTNKLRSTMSTKTSNLLLSKFKFTI 46
YC+ T H LF+N R+ + NL LS K I
Sbjct: 430 YCRGNTPHELFSNWKRTLQALHECNLRLSASKTII 464
>SB_39358| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 793 EKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYM 686
+K +K + L + +LK L E Y+ LK K L KY+
Sbjct: 89 QKGKKPFYLRKSELKKLELAEKYKELKSKGKLQKYL 124
>SB_34115| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 1572
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -1
Query: 520 TETNDTSIPGEPILFTENEGVLLCSVDRPSIVKMLS 413
+E D SI P + N G L+C VDR SI ++ S
Sbjct: 37 SELADVSIEPTPHILVGNGG-LMCGVDRESITRVFS 71
>SB_4896| Best HMM Match : TFIID_20kDa (HMM E-Value=2.3e-05)
Length = 819
Score = 28.3 bits (60), Expect = 7.8
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +3
Query: 354 IRTLQLSFSKFT--KASVSNSRLSILTIDGLSTEHNSTPSFSVNKMGSPGMLVSLVSVTT 527
I +++LS S T +S++ ++LS L+ LST STPS S P + V
Sbjct: 183 IGSVELSSSAATPSSSSITTTKLSSLSTPSLSTPSLSTPSLSTPLPSKPS---TTWKVFR 239
Query: 528 NSILLVKLVTSG 563
+LL + V G
Sbjct: 240 TKVLLERSVKEG 251
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,212,132
Number of Sequences: 59808
Number of extensions: 468883
Number of successful extensions: 1139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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