Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o06
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein S30|S...    52   4e-08
SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein S30|Schizosa...    52   4e-08

>SPBC19G7.03c |rps3002|rps30-2, rps30|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 61

 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = -1

Query: 183 GKVHGSLARAGKVKGQTPKVEKQQKRRR 100
           GKVHGSLARAGKVK QTPKVEKQ+K ++
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQ 29



 Score = 31.9 bits (69), Expect = 0.043
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 94  GRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 5
           GRA +R+ Y RRFVNV    G +R  N +S
Sbjct: 32  GRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


>SPAC19B12.04 |rps3001|rps30-1|40S ribosomal protein
           S30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 61

 Score = 52.0 bits (119), Expect = 4e-08
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = -1

Query: 183 GKVHGSLARAGKVKGQTPKVEKQQKRRR 100
           GKVHGSLARAGKVK QTPKVEKQ+K ++
Sbjct: 2   GKVHGSLARAGKVKSQTPKVEKQEKPKQ 29



 Score = 31.9 bits (69), Expect = 0.043
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 94  GRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 5
           GRA +R+ Y RRFVNV    G +R  N +S
Sbjct: 32  GRAYKRLLYVRRFVNVTNMVGGKRRMNPSS 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,322
Number of Sequences: 5004
Number of extensions: 22619
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)