Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12o06
(432 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0507 + 3655570-3655573,3655648-3655832 52 2e-07
04_04_0165 + 23247265-23247472,23248115-23248407,23249182-232492... 34 0.057
02_02_0664 - 12747888-12747900,12748161-12748229,12748332-127483... 30 0.92
02_01_0033 + 202703-202705,203397-203458,203566-203665,203875-20... 27 4.9
05_07_0274 - 28873531-28873644,28873727-28873981,28874111-288741... 27 6.5
02_04_0640 - 24664841-24664855,24664895-24664978,24665232-246653... 27 6.5
08_01_0533 + 4625376-4625709,4625799-4625966,4627428-4627689,462... 27 8.6
06_03_0685 - 23499779-23500204 27 8.6
05_02_0157 + 7171791-7172030,7172635-7172667,7172966-7173037,717... 27 8.6
02_02_0400 + 9836045-9837115,9837474-9838577 27 8.6
>06_01_0507 + 3655570-3655573,3655648-3655832
Length = 62
Score = 52.0 bits (119), Expect = 2e-07
Identities = 22/28 (78%), Positives = 26/28 (92%)
Frame = -1
Query: 183 GKVHGSLARAGKVKGQTPKVEKQQKRRR 100
GKVHGSLARAGKV+GQTPKV KQ K+++
Sbjct: 2 GKVHGSLARAGKVRGQTPKVAKQDKKKK 29
Score = 46.4 bits (105), Expect = 1e-05
Identities = 19/29 (65%), Positives = 24/29 (82%)
Frame = -3
Query: 94 GRAKRRIQYNRRFVNVVQTFGRRRGPNSN 8
GRA +R+QYNRRFV V FG++RGPNS+
Sbjct: 32 GRAHKRMQYNRRFVTAVVGFGKKRGPNSS 60
>04_04_0165 +
23247265-23247472,23248115-23248407,23249182-23249239,
23249302-23250014
Length = 423
Score = 33.9 bits (74), Expect = 0.057
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 376 RAIDTRPGRQWPGVHWSDQGTHSYSCCSW**RPYSIIMWS 257
+A+ RP PG+HW++Q YS CS P I MW+
Sbjct: 368 KAMSMRPDAH-PGIHWNNQWMRGYSDCSHWCLPGPIDMWN 406
>02_02_0664 -
12747888-12747900,12748161-12748229,12748332-12748395,
12749540-12749558,12749777-12749843,12749934-12749953,
12750079-12750248,12751646-12751823
Length = 199
Score = 29.9 bits (64), Expect = 0.92
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 352 RQWPGVHWSDQGTHSY 305
R WPG+HWSD T Y
Sbjct: 51 RIWPGLHWSDSSTPLY 66
>02_01_0033 +
202703-202705,203397-203458,203566-203665,203875-203916,
204264-204305,204437-204589,206559-207221
Length = 354
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 123 PLWGFVL*LYLHEPKIRALYHQAMALSGLV 212
P WG V L L P + ++HQ++A G +
Sbjct: 282 PSWGEVKDLQLQAPCYQGMFHQSVACPGFI 311
>05_07_0274 -
28873531-28873644,28873727-28873981,28874111-28874179,
28874277-28874415,28874511-28875076,28875225-28875326,
28875425-28875491,28875576-28876072,28876148-28876212,
28876470-28876567,28876652-28876694,28876870-28876963,
28877325-28877360,28877454-28877542,28877667-28877788,
28878193-28878404
Length = 855
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -1
Query: 150 KVKGQTPKVEKQQKRRRRLAVLSVEFSTTEDLSTLCRPSDVV 25
+++ T K++ Q R + VLS +DLS++C+ +V
Sbjct: 342 QMEEDTKKIQIQDNRNHIIEVLSANDLDCDDLSSICQADTMV 383
>02_04_0640 -
24664841-24664855,24664895-24664978,24665232-24665319,
24665457-24667318
Length = 682
Score = 27.1 bits (57), Expect = 6.5
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Frame = +1
Query: 283 FITNCSKSTNAFLDLTNGLLAIDVQDV-----CRLPSDMQLHIVKS 405
FI + S +AF GLL++ VQD+ C PS +QLH +KS
Sbjct: 346 FIEDESVIQDAFAQCIGGLLSVVVQDMRLTVECVHPS-VQLHTIKS 390
>08_01_0533 +
4625376-4625709,4625799-4625966,4627428-4627689,
4627787-4627934,4628453-4628496,4628812-4628859,
4629245-4630509,4630741-4630839,4630916-4631097,
4631186-4631246,4631488-4631725,4631818-4631971,
4632042-4632335
Length = 1098
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 383 ISEGNRHTSWTSMARS 336
+S+GN H WT+MA+S
Sbjct: 421 LSDGNGHVLWTTMAKS 436
>06_03_0685 - 23499779-23500204
Length = 141
Score = 26.6 bits (56), Expect = 8.6
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = -1
Query: 195 PLLGGKVHGSLARAGKVKGQTPKVEKQQKRRRRLAVLSVEFSTT 64
P GG++HG R G++ + P+ + ++ + A+++V +TT
Sbjct: 72 PPRGGRIHGLPPRGGRIHRRRPQ-GRHRRASGKAAMMTVVAATT 114
>05_02_0157 +
7171791-7172030,7172635-7172667,7172966-7173037,
7175212-7175310,7176135-7176194,7176347-7176463
Length = 206
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 165 LARAGKVKGQTPKVEKQQKRRR 100
+A GKV+G +P +KQ++ RR
Sbjct: 132 VAGEGKVEGNSPDTKKQERHRR 153
>02_02_0400 + 9836045-9837115,9837474-9838577
Length = 724
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -1
Query: 72 STTEDLSTLCRPSDVVAD 19
S E L+TLC P DVV D
Sbjct: 445 SAAEHLTTLCTPDDVVLD 462
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,622
Number of Sequences: 37544
Number of extensions: 166360
Number of successful extensions: 500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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