Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o06
         (432 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p pro...    78   4e-15
AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-P...    78   4e-15
AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-P...    78   4e-15
AY069525-1|AAL39670.1| 1150|Drosophila melanogaster LD24034p pro...    29   2.7  
AE014296-221|AAF47472.1| 1150|Drosophila melanogaster CG2469-PB,...    29   2.7  
AE014296-220|AAN11469.1| 1150|Drosophila melanogaster CG2469-PA,...    29   2.7  
BT029945-1|ABM92819.1|  657|Drosophila melanogaster IP16959p pro...    27   8.2  
BT023833-1|AAZ86754.1|  657|Drosophila melanogaster LD27920p pro...    27   8.2  
AE013599-3932|AAF47253.2|  657|Drosophila melanogaster CG4806-PA...    27   8.2  

>AY071683-1|AAL49305.2|  147|Drosophila melanogaster RH08962p
           protein.
          Length = 147

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
 Frame = -1

Query: 393 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 217
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 16  MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 75

Query: 216 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKRRRR 97
               L +P+LGGKVHGSLARAGKVKGQTPKVEKQ+K++++
Sbjct: 76  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKK 115



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 27/30 (90%), Positives = 28/30 (93%)
 Frame = -3

Query: 94  GRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 5
           GRAKRRIQYNRRFVN VQ FGRRRGPN+NS
Sbjct: 117 GRAKRRIQYNRRFVNFVQGFGRRRGPNANS 146


>AE014297-2878|AAN13838.1|  132|Drosophila melanogaster CG15697-PB,
           isoform B protein.
          Length = 132

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
 Frame = -1

Query: 393 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 217
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 216 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKRRRR 97
               L +P+LGGKVHGSLARAGKVKGQTPKVEKQ+K++++
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKK 100



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 27/30 (90%), Positives = 28/30 (93%)
 Frame = -3

Query: 94  GRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 5
           GRAKRRIQYNRRFVN VQ FGRRRGPN+NS
Sbjct: 102 GRAKRRIQYNRRFVNFVQGFGRRRGPNANS 131


>AE014297-2877|AAF55815.1|  132|Drosophila melanogaster CG15697-PA,
           isoform A protein.
          Length = 132

 Score = 78.2 bits (184), Expect = 4e-15
 Identities = 41/100 (41%), Positives = 58/100 (58%), Gaps = 1/100 (1%)
 Frame = -1

Query: 393 MQLHIRGQST-HVLDVNGQESIGQIKERIRTLAAVGDEDLTLSLCGAPXXXXXXXXXXXX 217
           MQL +RG  T   L+V+   +I  +K ++  +     E+ +L   G              
Sbjct: 1   MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLANETPVTALSS 60

Query: 216 XXXXLTVPLLGGKVHGSLARAGKVKGQTPKVEKQQKRRRR 97
               L +P+LGGKVHGSLARAGKVKGQTPKVEKQ+K++++
Sbjct: 61  FELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKK 100



 Score = 60.9 bits (141), Expect = 7e-10
 Identities = 27/30 (90%), Positives = 28/30 (93%)
 Frame = -3

Query: 94  GRAKRRIQYNRRFVNVVQTFGRRRGPNSNS 5
           GRAKRRIQYNRRFVN VQ FGRRRGPN+NS
Sbjct: 102 GRAKRRIQYNRRFVNFVQGFGRRRGPNANS 131


>AY069525-1|AAL39670.1| 1150|Drosophila melanogaster LD24034p protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = -1

Query: 171  GSLARAGKVKGQTPKVEKQQKR----RRRLAVLSVE-FSTTEDLS 52
            G+  ++GK KG+ PK  K+ K     ++RL VLS E  ST+E  S
Sbjct: 961  GASGKSGKKKGKKPKPVKESKEKLSAKQRLKVLSKETISTSESES 1005


>AE014296-221|AAF47472.1| 1150|Drosophila melanogaster CG2469-PB,
            isoform B protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = -1

Query: 171  GSLARAGKVKGQTPKVEKQQKR----RRRLAVLSVE-FSTTEDLS 52
            G+  ++GK KG+ PK  K+ K     ++RL VLS E  ST+E  S
Sbjct: 961  GASGKSGKKKGKKPKPVKESKEKLSAKQRLKVLSKETISTSESES 1005


>AE014296-220|AAN11469.1| 1150|Drosophila melanogaster CG2469-PA,
            isoform A protein.
          Length = 1150

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
 Frame = -1

Query: 171  GSLARAGKVKGQTPKVEKQQKR----RRRLAVLSVE-FSTTEDLS 52
            G+  ++GK KG+ PK  K+ K     ++RL VLS E  ST+E  S
Sbjct: 961  GASGKSGKKKGKKPKPVKESKEKLSAKQRLKVLSKETISTSESES 1005


>BT029945-1|ABM92819.1|  657|Drosophila melanogaster IP16959p
           protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 123 EKQQKRRRRLAVLSVEFSTTED 58
           E++QK+R RL V ++ + +TED
Sbjct: 41  ERRQKKRARLIVRNISYKSTED 62


>BT023833-1|AAZ86754.1|  657|Drosophila melanogaster LD27920p
           protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 123 EKQQKRRRRLAVLSVEFSTTED 58
           E++QK+R RL V ++ + +TED
Sbjct: 41  ERRQKKRARLIVRNISYKSTED 62


>AE013599-3932|AAF47253.2|  657|Drosophila melanogaster CG4806-PA
           protein.
          Length = 657

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 123 EKQQKRRRRLAVLSVEFSTTED 58
           E++QK+R RL V ++ + +TED
Sbjct: 41  ERRQKKRARLIVRNISYKSTED 62


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,948,333
Number of Sequences: 53049
Number of extensions: 282015
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1355285490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)