Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12o01
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   5.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    22   7.6  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    22   7.6  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    22   7.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/41 (24%), Positives = 18/41 (43%)
 Frame = -2

Query: 136 FKQSFHIKTTHSRFSRHRTECSNGAVFSNNVLLLNYRTPCC 14
           +  SFH    +S+   H+ +C  G   + +    +  T CC
Sbjct: 790 YAASFHTDIGNSQSLAHQDQCCPGFTMTKSGKTRHQNTGCC 830


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -2

Query: 268 IRNIISFLLNTNFQTKY 218
           + NI ++++NTN+ +KY
Sbjct: 194 MNNIETYIVNTNYSSKY 210


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 KLPDYKHQYLV*KLVFNKKEMIF 263
           ++ DY H Y + +  +NK E+I+
Sbjct: 424 RIIDYYHSYKMHQKPYNKDEIIY 446


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 195 KLPDYKHQYLV*KLVFNKKEMIF 263
           ++ DY H Y + +  +NK E+I+
Sbjct: 424 RIIDYYHSYKMHQKPYNKDEIIY 446


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 500 YFHSHSKYLNYKDI*LNNYKNL 565
           Y ++++ Y NY +   NNYK L
Sbjct: 330 YNNNYNNYNNYNNNYNNNYKKL 351


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 337 YSTLQVIKNQNNLSMKTVVK 396
           +S   VI N+NN SMK  V+
Sbjct: 483 FSYTIVINNRNNTSMKGTVR 502


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 572 KLLNSCNY*VKYPCSLDIYCAN 507
           KL  + NY  + P  + IYC N
Sbjct: 106 KLYYNINYIEQIPIPVPIYCGN 127


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 572 KLLNSCNY*VKYPCSLDIYCAN 507
           KL  + NY  + P  + IYC N
Sbjct: 106 KLYYNINYIEQIPIPVPIYCGN 127


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 572 KLLNSCNY*VKYPCSLDIYCAN 507
           KL  + NY  + P  + IYC N
Sbjct: 106 KLYYNINYIEQIPIPVPIYCGN 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,649
Number of Sequences: 438
Number of extensions: 3767
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)