Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n19
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    91   2e-19
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    31   0.22 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.5  
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   2.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.6  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    27   3.6  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    26   6.2  
SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces pombe...    26   6.2  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 90.6 bits (215), Expect = 2e-19
 Identities = 63/190 (33%), Positives = 95/190 (50%), Gaps = 15/190 (7%)
 Frame = -1

Query: 642  FXYVAACREERQPSLLARIVGVF----------SACGAXVLVLEHVWYGCGPGAPRYDLK 493
            F Y++       P+ L +I G +          + C   ++++E+V+Y   P    +DLK
Sbjct: 1731 FDYISKVFFHELPTALTKIFGFYRVDIRNPTTGTICKTDIMIMENVFYDECPSRI-FDLK 1789

Query: 492  GSSRXXXXXXXXXXXXXXXLMDENLLNSRWERPLYVQSASGAALWRAVRRDTALLARLGV 313
            GS R                +DENL+   +E P++V     + L   +  DT  L++L +
Sbjct: 1790 GSMRNRHVESTGKVDEVL--LDENLVELIYESPIFVSEQLKSLLHSCLWNDTLFLSKLNI 1847

Query: 312  MDYSXXXXXXXXXXXL--GIIDYIRTFTWDKKLEHLVKKN--LGSG-QPTVVSPDQYRSR 148
            MDYS           L  GIID+IRT+TWDKKLE  VK+   +G G +PT+V+P QY++R
Sbjct: 1848 MDYSLIVGIDYTKKELYVGIIDFIRTYTWDKKLESWVKEKGLVGRGPEPTIVTPKQYKNR 1907

Query: 147  FCAAARKYFL 118
            F  A   Y L
Sbjct: 1908 FRKAMDCYIL 1917


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -1

Query: 264 GIIDYIRTFTWDKKLEHLVKK-NLGSGQPTVVSPDQYRSRF 145
           GIID +  +++ K++EHL K  N      + V P +Y SRF
Sbjct: 614 GIIDLLTKYSYVKRVEHLWKGINHSDSVISAVPPAEYASRF 654


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -2

Query: 182 RPWCPRTSTGAGSARPPGS 126
           RP  PR S GAG A PP +
Sbjct: 328 RPVAPRPSAGAGGANPPAA 346


>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 325 RQQGGVAAHGPPQRGAARGLHVQRPLPARVEQVLVHEHVLRRGPRGLRRQAVSRGALEVV 504
           +Q G  AA+ P Q  A     +   L   + Q L  +    +GP+ +++QA  R A    
Sbjct: 495 KQLGPAAANNPEQATA-----IANALAVALAQKLQKQQTQMQGPQQVQQQAKRRKAYTSQ 549

Query: 505 XRRPGAAXVPH 537
              P    +PH
Sbjct: 550 QLNPAPTAMPH 560


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 92   MTSQCWGTCRKYFLAAAQNRLRYWSGDT 175
            M   C   CR + L A  N+LRY S  T
Sbjct: 1969 MNRSCDSKCRYFLLTAIANQLRYPSSHT 1996


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 130  EVFPARSPTLGRHTHPEARIRNPNYRNMYTVVRTF 26
            E FPA +P L     P + + NP++ ++Y   + F
Sbjct: 1331 EKFPAPTPLLDLQNAPVSSLNNPSFISLYPNFKFF 1365


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +1

Query: 463 LRRQAVSRGALEVVXRRPGAAXVPHVLQHQHXRAARAEHSHYAR*QAGLALLPA 624
           + R  +S+G L ++ R+     +PHV   ++   A  E    A  + G++L P+
Sbjct: 2   ISRGLLSKGILSIIKRKNTGNLIPHVYYSEYH--ADIEERRKALGRLGISLYPS 53


>SPBC337.11 |||mitochondrial peptidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 645 TFXYVAACREERQPSLLARIVGVFSACGAXVLVLEHVWYGC 523
           T  Y+A  R E + S +  +VG   A G+ V  +   W GC
Sbjct: 135 TTAYLALSRGETKGSDIVLVVGALGAVGSAVCQIAEDW-GC 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,189,797
Number of Sequences: 5004
Number of extensions: 38957
Number of successful extensions: 152
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)