Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12n17
(899 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 290 2e-79
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 152 8e-38
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 133 3e-32
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 130 3e-31
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 121 1e-28
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 103 5e-23
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 93 6e-20
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 91 3e-19
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 31 0.17
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 31 0.22
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 29 0.90
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 28 2.1
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 27 3.6
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 27 3.6
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 26 6.3
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch... 26 6.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 6.3
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 290 bits (711), Expect = 2e-79
Identities = 140/245 (57%), Positives = 177/245 (72%)
Frame = -2
Query: 898 LAALHASGANVVXSKLPIGDVATQYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDL 719
L A+ A+GA VV SKLPIGD+ATQYFADRD+FCAGRV +D+ R +A GG++ ++ ++
Sbjct: 283 LEAIVATGAKVVLSKLPIGDLATQYFADRDIFCAGRVAADDLNRVVQAVGGSIQSTCSNI 342
Query: 718 TPQVLGHTALFTEKQLGADRYNFFTGCPGAKTCTLILRGGAEQFLEETERSLHDAIMIVR 539
+ LG F E+Q+G DR+N F GCP AKTCTLILRGGA+QF+ E ERSLHDAIMIV+
Sbjct: 343 EEKHLGTCDTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVK 402
Query: 538 RTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDG 359
+KN+ VVAGGGA +M++S +LR +SL ++GK+Q IPRQL DNAG D
Sbjct: 403 HALKNNLVVAGGGACEMELSKYLRDYSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDS 462
Query: 358 TGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVD 179
T +LNKLR +HA GE GVD+ S V +NF K VWEP+ VK NA+ +A EA ILSVD
Sbjct: 463 TNILNKLRMQHAKGEMWAGVDMDSEGVANNFEKFVWEPSTVKSNAILSATEAATLILSVD 522
Query: 178 ETIKN 164
ETIKN
Sbjct: 523 ETIKN 527
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 152 bits (368), Expect = 8e-38
Identities = 80/243 (32%), Positives = 122/243 (50%), Gaps = 1/243 (0%)
Frame = -2
Query: 871 NVVXSKLPIGDVATQYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDLTPQVLGH-T 695
++V ++ + D+A Y ++ R + D R ARACG ++ DL + +G
Sbjct: 286 DLVITEKGVSDLAQHYLLKANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGC 345
Query: 694 ALFTEKQLGADRYNFFTGCPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAV 515
LF +LG + Y F TGC K CT++LRG ++ + E ER+L DA+ + R + +
Sbjct: 346 GLFYIDKLGDEYYTFLTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKL 405
Query: 514 VAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLR 335
GGGA +M +S L + + G Q IPR L N G + L +LR
Sbjct: 406 SPGGGATEMAVSVRLAEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELR 465
Query: 334 QKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKNVKG 155
KHA G+H+ G+D +G VVD VWEP VKL ++ A E+ +L VD+ + V+
Sbjct: 466 AKHAEGQHSFGIDGETGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRK 525
Query: 154 GEE 146
E
Sbjct: 526 HSE 528
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 133 bits (322), Expect = 3e-32
Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 18/256 (7%)
Frame = -2
Query: 880 SGANVVXSKLPIGDVATQYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDLTPQ--- 710
+GANV+ + I D+ + + R +ED+RR A+A G +L+S +L +
Sbjct: 286 AGANVILTTKGIDDLCLKSIIEAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETF 345
Query: 709 ---VLGHTALFTEKQLGADRYNFFTGCPGAKTCTLILRGGAEQFLEETERSLHDAIMIVR 539
LG +++ D G + +++LRG E L+E ERS+HD++ +V+
Sbjct: 346 ESSYLGSAEEVVQEKFSDDECILVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVK 405
Query: 538 RTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDG 359
RT+++ VV GGGAV+ +S +L + + L +EQL IPR LA NA D
Sbjct: 406 RTLESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALLIIPRTLAVNAAKDS 465
Query: 358 TGLLNKLRQKHAA------------GEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSA 215
T L KLR HAA G +G+D+++G + DN V EP++ KL ++ +
Sbjct: 466 TELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKS 525
Query: 214 ACEATAQILSVDETIK 167
A EA IL +D +IK
Sbjct: 526 AVEACIAILRIDTSIK 541
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 130 bits (314), Expect = 3e-31
Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 6/241 (2%)
Frame = -2
Query: 880 SGANVVXSKLPI-----GDVATQYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDLT 716
+GANV+ + I D+A + A + + +++ ++ G +A
Sbjct: 282 AGANVILIQKSILRDAVNDLALHFLAKLKIMVIKDIERDEVEFICKSTGCKPIADIESFA 341
Query: 715 PQVLGHTALFTEKQLGADRYNFFTGCPGA-KTCTLILRGGAEQFLEETERSLHDAIMIVR 539
LGH L E ++ F+G A KT +++ RG LEE ERSLHDA+ ++R
Sbjct: 342 EDKLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGANLLTLEEAERSLHDALCVIR 401
Query: 538 RTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDG 359
+K A++AGGG+ +++ + L H+ QL G+E + IP LA+NAGL+
Sbjct: 402 CLVKQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNA 461
Query: 358 TGLLNKLRQKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVD 179
++ +LR +HA GE T G++V G V + + V +P LV ++A+ A E T I+ +D
Sbjct: 462 IQVVTELRSRHANGEKTAGINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKID 521
Query: 178 E 176
+
Sbjct: 522 D 522
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 121 bits (292), Expect = 1e-28
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 1/222 (0%)
Frame = -2
Query: 829 QYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDLTPQV-LGHTALFTEKQLGADRYN 653
Q FAD + + + R + GG + AST D V LGH E +G D+
Sbjct: 298 QLFADAGIMSIEHADFDGIERLSLVTGGEI-ASTFDHPELVKLGHCKKIEEIIIGEDKMI 356
Query: 652 FFTGCPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAH 473
F+G + CT++LRG Q L+E+ER++HDA+ ++ +T+ V GGG +M ++
Sbjct: 357 KFSGVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKA 416
Query: 472 LRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDV 293
+ + GK+ + +P LADNAG D + L+ +L+ H G T G+D+
Sbjct: 417 VEEAATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDM 476
Query: 292 ISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 167
GE+ D AK + E +K VS+ E +L VD +K
Sbjct: 477 DEGEIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTILK 518
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit Cct8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 103 bits (246), Expect = 5e-23
Identities = 68/251 (27%), Positives = 121/251 (48%), Gaps = 5/251 (1%)
Frame = -2
Query: 889 LHASGANVVXSKLPIGDVATQYFADRDMFCAGRVPEE-DMRRTARACGGAVLASTRDLTP 713
++ +G VV + + D+ Y +R RVP + ++RR R G LA P
Sbjct: 283 IYDAGVRVVVTSGNVNDLVLHYL-NRFEILVIRVPSKFELRRLCRVVGATPLARMGVPMP 341
Query: 712 QVLGHTALFTEKQLGADRYNFFTGCPG-AKTCTLILRGGAEQFLEETERSLHDAIMIVRR 536
+ +G + ++G DR F +T T++LRG + +L++ ER++ D + IV+
Sbjct: 342 EEMGSVDVVETIEIGGDRVTVFRQVEDITRTATIVLRGATKTYLDDLERAIDDGVNIVKA 401
Query: 535 TIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGT 356
+K++ ++ G GA DMQ+ L S + G Q +PR +++NAGLD T
Sbjct: 402 LVKDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFEVVPRTISENAGLDPT 461
Query: 355 GLLNKL-RQKHAAGEHTHGVDV--ISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILS 185
+++KL H + GVDV + +D +++ L K +A+ A E +L+
Sbjct: 462 DVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSAIRLATETVLTVLN 521
Query: 184 VDETIKNVKGG 152
VD+ + + G
Sbjct: 522 VDQVVMSKPAG 532
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 92.7 bits (220), Expect = 6e-20
Identities = 53/236 (22%), Positives = 114/236 (48%), Gaps = 2/236 (0%)
Frame = -2
Query: 868 VVXSKLPIGDVATQYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDLTPQVLGHTAL 689
V+ ++ I ++ A + R +M R ACGG S DL P+VLG
Sbjct: 289 VIINQKGIDPLSLDVLAKNGIMALRRAKRRNMERLQLACGGVAQNSVDDLNPEVLGWAGS 348
Query: 688 FTEKQLGADRYNFFTGCPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVA 509
E+ LG ++Y F K+ T+++ G +++ + + D + V+ ++++ ++
Sbjct: 349 VYERTLGEEKYTFVEDVKDPKSATILIHGPNTYTIQQIQDATRDGLRAVKNAVEDNCLIV 408
Query: 508 GGGAVDMQISAHLRSH--SLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLR 335
G GA ++ +AHLR+ + ++ GK ++ IP+ LA N+ D + L+
Sbjct: 409 GAGAFEVACAAHLRNKFAAKEVKGKAKMGVYAYADALLIIPKTLAANSSYDTQDAIVALQ 468
Query: 334 QKHAAGEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 167
++ + G + G+D+ +G D + +++ V + + +A + ++SVD+ ++
Sbjct: 469 EEASEG-YKVGLDLKTGMPFDPEVEGIYDNYRVIRHMLHSATVIASNLISVDQILR 523
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 90.6 bits (215), Expect = 3e-19
Identities = 58/240 (24%), Positives = 107/240 (44%), Gaps = 3/240 (1%)
Frame = -2
Query: 880 SGANVVXSKLPIGDVATQYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDLTPQVLG 701
+GAN+V + D A ++ V ++ A A G ++ DL+ LG
Sbjct: 297 AGANLVICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLG 356
Query: 700 HTALFTEKQLGA--DRYNFFTGCPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIK 527
+ E G D+ C ++ T+ +RG + ++E +R+LHDA+ +VR I+
Sbjct: 357 SAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIR 416
Query: 526 NDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLL 347
++ VV GGGA ++ S + + ++ G +Q IP LA+N+GL L
Sbjct: 417 DNRVVYGGGAAEISCSLAVTKEAEKIPGIDQYSMGAFADALDTIPLALAENSGLSSIEAL 476
Query: 346 NKLRQKHAAGEHTH-GVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETI 170
++ +H + G+D + D + V +P + K + A + +L V++ I
Sbjct: 477 TAVKARHVKENKAYLGIDCLQTGSNDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 31.5 bits (68), Expect = 0.17
Identities = 19/56 (33%), Positives = 29/56 (51%)
Frame = +3
Query: 504 PPATTASFLIVLRTIMMASCRERSVSSKNCSAPPRRINVHVLAPGQPVKKLYLSAP 671
PP TAS L + R ++ S RS+SS + S+P + H+ P+K +Y P
Sbjct: 27 PPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLPLREHL-----PLKNVYSQVP 77
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 31.1 bits (67), Expect = 0.22
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -2
Query: 604 GGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXX 425
G +E + E + + DA+ V+ + ++ V+ G G + A LR + +Q
Sbjct: 415 GSSEVEVNEKKDRIVDALNAVKAAV-SEGVLPGAGT--SFVKASLRLGDIPTNNFDQKLG 471
Query: 424 XXXXXXXXAIPRQ-LADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVD 272
P Q + +NAGL+G ++ KL++ + E G D+ VD
Sbjct: 472 VEIVRKAITRPAQTILENAGLEGNLIVGKLKELYGK-EFNIGYDIAKDRFVD 522
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 29.1 bits (62), Expect = 0.90
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = +2
Query: 233 LDEGRLPHALRKVIHHLSTDNVHTVRVLPSGVLLPQFIEESG 358
+DEG ALR VI+HL T +V T+R LL + I+ G
Sbjct: 309 IDEGL--DALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQG 348
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 27.9 bits (59), Expect = 2.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 618 VHVLAPGQPVKKLYLSAPSCFSV 686
+H++ P + +K LYLS+P F++
Sbjct: 278 LHIVVPEKNLKSLYLSSPGTFNI 300
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.1 bits (57), Expect = 3.6
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 9/118 (7%)
Frame = -2
Query: 871 NVVXSKLPIGDVATQYFADRDMFCAGRVPEEDMRRTARACGGAVLASTRDLT--PQVLGH 698
N+V ++ I +A +YF + + + E + AR C +++S L+ P+ LG
Sbjct: 607 NLVFAQGQIPSIALKYFEEHGVIAFHGLKESVLYDIARCCRADIISSIDKLSLCPR-LGT 665
Query: 697 TALFTEKQLGADR-------YNFFTGCPGAKTCTLILRGGAEQFLEETERSLHDAIMI 545
F + D + C CT++LRG L + ++ + ++I
Sbjct: 666 CGRFQLRTYVVDENKGLRKTFAILDRCSERLGCTIVLRGADYNQLSKVKKIVELVVLI 723
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 532 IKNDAVVAGG-GAVDMQISAHLRSHSLQLAGKE 437
+KN +V G +VDMQ++ HL++ + + G+E
Sbjct: 19 LKNGTIVHGTITSVDMQMNTHLKAVKMTVKGRE 51
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 26.2 bits (55), Expect = 6.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 732 EASTAPPQARAVRRMSSSGTRPAQNISRSAKY-CVATSPMGSLLXTTFAP 878
E STAPP A RR+ + R Y +A +P +L + AP
Sbjct: 1258 ELSTAPPGAVMARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRSVAP 1307
>SPBC19F8.06c |meu22||amino acid permease, unknown
11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = -1
Query: 824 LCGPRYVLRWPSARGRHAAYGARLRGSRARLNEGPHASSFGSHGALHG 681
+CG W S H + + +L + P+ S FG +G+++G
Sbjct: 423 ICGLSTTFIWGSICLAHIQFRRAWKIQNRKLEDLPYRSIFGVYGSIYG 470
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 26.2 bits (55), Expect = 6.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -3
Query: 321 LGSTRTVWTLSVERWWITLRSAC 253
L T TVW + WW+++ + C
Sbjct: 1523 LFGTMTVWVAHLIYWWVSIMALC 1545
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,445,912
Number of Sequences: 5004
Number of extensions: 67009
Number of successful extensions: 219
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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