Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc12n07
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc... 31 0.20
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 29 0.61
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 28 1.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 28 1.9
SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces ... 28 1.9
SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces ... 28 1.9
SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr 3|... 27 2.5
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 27 2.5
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 3.2
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 27 4.3
SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyc... 26 5.7
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 26 5.7
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 26 7.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 25 9.9
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 25 9.9
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 9.9
>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
Mus81|Schizosaccharomyces pombe|chr 3|||Manual
Length = 608
Score = 31.1 bits (67), Expect = 0.20
Identities = 20/48 (41%), Positives = 24/48 (50%)
Frame = -3
Query: 666 SRQRARSNRTADILFEQF*TRNFSRHVGLLANYFGPL*TFHEKRKTAA 523
S + A SN D LF TR+ V LLA + F+EKRKT A
Sbjct: 437 SIRTAVSNTQVDQLFHVRHTRSLEHSVSLLAEMTKQINLFYEKRKTLA 484
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 29.5 bits (63), Expect = 0.61
Identities = 17/46 (36%), Positives = 27/46 (58%)
Frame = -1
Query: 248 LSCMHILFQYLRGKTTQEEKSFSCYTVIKDFGRQCIDVYRDLKDVF 111
LS +H+L YLR +T EE+ F Y V+ F RQ + +++ + F
Sbjct: 1036 LSYLHLLKPYLRSASTIEEQRF-LYYVVAIF-RQVLPFQKEISESF 1079
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 28.3 bits (60), Expect = 1.4
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = +2
Query: 203 WFCRVDIEIKCACTTICVY*NALCLYRKTGHTFRQLHA 316
W R E++C C+ + + Y + GH F LH+
Sbjct: 1338 WPLRTSAELECVCSIFNIEKDICTKYVQFGHVFNLLHS 1375
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 221 YLRGKTTQEEKSFSCYTVIKDFGRQCIDVYRDLKDVFDLLHAHSMSDKDKNSLMDL 54
++R K+ + F C +++ Q Y D+FDL+ A +S+ +L DL
Sbjct: 346 HIRNKSASDAAIFQCISLLSIALGQAFSNYA--YDLFDLIFASGLSEASYRALSDL 399
>SPBC1215.01 |shy1||SURF-family protein Shy1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +1
Query: 655 TLTGTTASICSNTLRT--LSSMPVVSPVLNQWERLLMESPASIILTASSKVQLP 810
TL GTT N LS++P+V+ L W+ E II T + ++Q P
Sbjct: 25 TLEGTTVRPKKNKFLVGLLSAVPIVTFALGTWQVKRREWKMGIINTLTERLQQP 78
>SPAC144.14 |klp8||kinesin-like protein Klp8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 511
Score = 27.9 bits (59), Expect = 1.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -1
Query: 398 SEAVKKFIRLSKSDYDDRLHVDESYN 321
S+ + KFI ++DY++R+H ES N
Sbjct: 397 SQKLLKFIEEIRNDYEERIHALESQN 422
>SPCC338.14 |||adenosine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 340
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 465 KFIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVL 596
K+ + +D+V +G ++ VS+ AAQN+ +AAQ+VL
Sbjct: 27 KYGLKSNDAVLASESQMGIYKEPCVSYSAGGAAQNSCRAAQYVL 70
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 27.5 bits (58), Expect = 2.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -1
Query: 779 MIDAGDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRV 648
M+DA + SHW T I + L + +PVSVRV
Sbjct: 784 MLDANTFVLDTSHWLLYAITLAIRPRMLITLGEDGQYLPVSVRV 827
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 3.2
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
Frame = +1
Query: 583 PNMS*EISRSKLFKENICRPV*TRTLTGTTASICSNTLRTLSSMPVV--SPVLNQWERLL 756
P +S IS + P T+ + S T + ++ P+ +P+ NQ+ ++
Sbjct: 1293 PAVSASISTPPAVVPTVQHPQPTKQIPTAAVKDPSTTSTSFNTAPIPQQAPLENQFSKMS 1352
Query: 757 MESPASIILTASSKVQLP 810
+E P + S K Q+P
Sbjct: 1353 LEPPVRPAVPTSPKPQIP 1370
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -1
Query: 176 YTVIKDFGRQCIDVYRDLKDVFDLLHAHSMSD 81
YT IKD R+ ID D KDVFDL++ + +D
Sbjct: 312 YTPIKD-ERELIDP--DQKDVFDLVNDNQFND 340
>SPAC2F3.05c |||xylose and arabinose reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 275
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 468 FIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQN 569
FIV P S R++ GDV F +S E + N
Sbjct: 226 FIVLPKSSTPRRIKENGDVFDFEISKEDMEKLYN 259
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.2 bits (55), Expect = 5.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +3
Query: 447 HISYHTKFIVPPSDSVAIRVE 509
++ Y K +VPPSDS+ + E
Sbjct: 230 YVMYSNKLVVPPSDSIIKKCE 250
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/56 (21%), Positives = 29/56 (51%)
Frame = +3
Query: 468 FIVPPSDSVAIRVEHVGDVQQFSVSHEMFKAAQNNLQAAQHVLRNFSFKIVQREYL 635
F++ P+D V +R + D ++ VS EM+ A + ++ + + + ++Y+
Sbjct: 343 FVISPNDIVYVRERNQIDHVKYLVSKEMYAEAIDAVKKLPEIPPSLQISELAKKYI 398
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1207
Score = 25.4 bits (53), Expect = 9.9
Identities = 23/102 (22%), Positives = 43/102 (42%)
Frame = +1
Query: 382 FFTASDKRGTNSAGTLRCIILCT*VITQNLLYHHPTASLLGLNTLAMCSSFPFLMKCSKR 561
+F ++D + +S LR I + + L ++ +AS LG L + S P ++
Sbjct: 1077 YFASADLQPMHSIIALRLAINAS-----HKLKNYKSASFLGNKLLQLAESGPAAEAANRA 1131
Query: 562 PKIICKQPNMS*EISRSKLFKENICRPV*TRTLTGTTASICS 687
+ + P+ + EI + IC T +G +CS
Sbjct: 1132 ITLGDRNPHDAFEIEYDPHVEMRICPKTLTPVYSGDDFDVCS 1173
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -1
Query: 710 DDNVRKVLEQIDAVVPVSV-RVQTGRQIFSLNNFEREISQDMLGCLQIILGRFEHFMRNG 534
D + K+ I+ SV R F+ NN +Q++L C++I+LG+ E
Sbjct: 85 DSEINKITHIINFAAESSVDRSFIDPLYFTKNNILS--TQNLLECVRILLGKKEELRNRL 142
Query: 533 KLLHIA 516
+H++
Sbjct: 143 NFVHVS 148
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -1
Query: 218 LRGKTTQEEKSFSCYTVIKDFGRQCIDVYRDLKDVFDLLHAHSMSDKDKN 69
LR +++EE CY+ ++DF RQ + + +FD+L S + N
Sbjct: 39 LRHDSSEEEVRQLCYSQLEDFLRQ--ETIPFVDKIFDVLREKSYLEGASN 86
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,079
Number of Sequences: 5004
Number of extensions: 74796
Number of successful extensions: 266
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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