Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n07
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0133 + 961625-961709,961796-961869,962236-962325,963087-96...    29   4.5  
05_03_0611 + 16171038-16171124,16171419-16171505,16173692-161737...    29   6.0  
04_04_0487 - 25585229-25585540,25585627-25585745,25586029-255861...    29   6.0  
09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792     28   7.9  
08_02_0894 + 22346027-22347925                                         28   7.9  

>02_01_0133 +
           961625-961709,961796-961869,962236-962325,963087-963164,
           963348-963412,963540-963732,963810-963900,963970-964034,
           964126-964284,964363-964368,964569-964678,964885-965080
          Length = 403

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 208 LPRRY*NKMCMHDNLCLLKCSLPIPQNRPYI 300
           LP  +    C +  LC+ K SL +P+  PY+
Sbjct: 125 LPNGWEENKCQNRTLCMEKLSLVLPETPPYV 155


>05_03_0611 +
           16171038-16171124,16171419-16171505,16173692-16173746,
           16174277-16174647
          Length = 199

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 815 KIGSCTFDE-AVKMIDA-GDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVSVRVQT 642
           K+GS  F + A K ID+ GD I  L    +     GI+ N R+ L +I  V  +S  + T
Sbjct: 7   KVGSYWFSKRASKEIDSIGDDISLLVEADAADTGKGIEWNSRRRLVEIVTVQSISTSIGT 66

Query: 641 G 639
           G
Sbjct: 67  G 67


>04_04_0487 -
           25585229-25585540,25585627-25585745,25586029-25586194,
           25586295-25586427,25586527-25586618,25586739-25586925,
           25587183-25587271,25587318-25587379,25587462-25587567,
           25587754-25588052,25588181-25588288,25588369-25588439,
           25588792-25588871
          Length = 607

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = +1

Query: 631 ICRPV*TRTLTGTTASICSNTLRTLSSMPV--VSPVLNQWERLLMESPASIILTASSKVQ 804
           +C+   TRT+ G + +IC +  R+    P   +  ++N   R L  + +S++    ++  
Sbjct: 26  VCKCATTRTMDGYSCAICKSAYRSQDLRPASHLEAIVN-IHRSLSSTVSSMVTQQEAQAD 84

Query: 805 LPIFK 819
           +P+ K
Sbjct: 85  IPVAK 89


>09_04_0536 + 18402259-18402300,18402441-18402573,18403173-18403792
          Length = 264

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 760 PSKAFPIGSAPAKRRASTITSVKCWSKSTRWFPSACAFK 644
           P++A+ + +A      + I +V C + ++RW P   AF+
Sbjct: 200 PARAYAVDAAGGGGGDAVIAAVVCHADTSRWDPDHAAFR 238


>08_02_0894 + 22346027-22347925
          Length = 632

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
 Frame = -1

Query: 734 STGETTGIDDN-VRKVLEQIDAVVPVSVRVQTGRQIFSLNNFER---EISQDMLGCLQII 567
           S G ++GI  + +R+     +A    + RVQ+G  +      E     IS+ ++   +  
Sbjct: 525 SGGFSSGISKSALRERFRSFNAAFEEAHRVQSGWCVPDTQLREELRISISEKLVPAYRSF 584

Query: 566 LGRFEHFMRNGK 531
           LGRF H + NGK
Sbjct: 585 LGRFRHHIENGK 596


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,816,442
Number of Sequences: 37544
Number of extensions: 469877
Number of successful extensions: 1236
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1236
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)