Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n07
         (827 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormo...    29   3.1  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    29   5.4  
Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...    28   7.1  
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...    28   7.1  
AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical ...    28   7.1  
U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical p...    28   9.4  
AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical...    28   9.4  
AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical ...    28   9.4  

>AF099917-9|AAC68787.1|  445|Caenorhabditis elegans Hypothetical
           protein F54D10.9 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -1

Query: 503 PNSDAVGWWYNK-FCVITYVHRIMHRSVP 420
           P +D   WWYNK F V TY +++  R  P
Sbjct: 307 PAADIGRWWYNKPFNVQTYFNKVTCRRAP 335


>AF067618-2|AAC19195.1|  920|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 266 protein.
          Length = 920

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -1

Query: 401 LSEAVKKFIRLSKSDYDDRLHVDESYNCPRVIAEM-YGRFCGIGKEHFSKHKLSCMHI 231
           L E  +KF  L K   DDR  ++  Y+ P +I+   Y       KE+ +K+ L+ ++I
Sbjct: 83  LDEMAEKFTILKKITQDDRELLEMKYSSPEIISNCDYFHTFNALKENLAKNVLNKLNI 140


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 429 SMHYSVHISYHTKFIVPPSDSVAIRVEHVGDVQQF 533
           S HY   I+Y T  ++PPSD +A+  E +    ++
Sbjct: 134 SWHYLFIIAYLTSTLIPPSDHLAVYNETLAHYPEY 168


>Z92831-6|CAB07365.2|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 567 NNLQAA-QHVLRNFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDARRFAGAEPM 743
           +NL+A  +  +     KIV  +       A  + NHR D+LQ+F   +  A R A  E  
Sbjct: 18  SNLRAFNRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSL--AERKAAEERH 75

Query: 744 GKAFDGIARVYHLDR 788
            KA + + R +  D+
Sbjct: 76  NKAIEELKRSHKNDK 90


>Z92786-3|CAB63202.1|  488|Caenorhabditis elegans Hypothetical
           protein F47H4.6 protein.
          Length = 488

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 251 KLSCMHILFQYLRGKTTQEEKSFSCYTVIKD 159
           K+ C +ILF++L+G +  E     C TV KD
Sbjct: 130 KVLCGYILFEFLQGNSIFEAYEKLCVTVGKD 160


>Z92777-12|CAJ58496.1|  355|Caenorhabditis elegans Hypothetical
           protein F22G12.1 protein.
          Length = 355

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 567 NNLQAA-QHVLRNFSFKIVQREYLPSGLNAHADGNHRVDLLQHFTDVIVDARRFAGAEPM 743
           +NL+A  +  +     KIV  +       A  + NHR D+LQ+F   +  A R A  E  
Sbjct: 18  SNLRAFNRESINELQNKIVNEQTQHVERIAQKEENHRQDMLQNFKSSL--AERKAAEERH 75

Query: 744 GKAFDGIARVYHLDR 788
            KA + + R +  D+
Sbjct: 76  NKAIEELKRSHKNDK 90


>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
           protein C47E12.5b protein.
          Length = 1028

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 642 GLNAHAD---GNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYH 779
           G N H D      ++D+LQ   D ++DAR  +  + +  A +    +YH
Sbjct: 636 GFNEHVDKLISGQQIDILQKVKDALIDARPSSAEDCIRWARNQFQELYH 684


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
           protein C47E12.5a protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 642 GLNAHAD---GNHRVDLLQHFTDVIVDARRFAGAEPMGKAFDGIARVYH 779
           G N H D      ++D+LQ   D ++DAR  +  + +  A +    +YH
Sbjct: 721 GFNEHVDKLISGQQIDILQKVKDALIDARPSSAEDCIRWARNQFQELYH 769


>AC024844-4|AAK29958.1|  421|Caenorhabditis elegans Hypothetical
           protein Y65B4A.2 protein.
          Length = 421

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 767 GDSIKSLSHWFSTGETTGIDDNVRKVLEQIDAVVPVS 657
           GD +K+L++W + G  TG  D  R     +   VP S
Sbjct: 209 GDPLKALTYWVNQGLVTGGRDGCRPYSFDLSCGVPCS 245


>U80027-12|AAC48126.2|  493|Caenorhabditis elegans Hypothetical
           protein T28A11.17 protein.
          Length = 493

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 803 CTFDEAVKMIDAGDSIKSLSHWFSTGET 720
           CT DE VKM+   D++K +  WFS   T
Sbjct: 337 CTQDE-VKMMGDSDAVKPIDGWFSENIT 363


>AL110479-29|CAB60311.2| 1044|Caenorhabditis elegans Hypothetical
           protein Y105C5B.2 protein.
          Length = 1044

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -1

Query: 551 HFMRNGKLLHIANVFNPNSDAVGWWYNKFC 462
           H  R+GK +H+ANV    SD  G    K C
Sbjct: 348 HMWRDGKAVHVANVKPRESDYCGGNMTKNC 377


>AF047655-1|AAC04402.1|  558|Caenorhabditis elegans Hypothetical
           protein C17B7.8 protein.
          Length = 558

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -1

Query: 803 CTFDEAVKMIDAGDSIKSLSHWFSTGET 720
           CT DE VKM+   D++K +  WFS   T
Sbjct: 379 CTQDE-VKMMGDSDAVKPIDGWFSENIT 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,318,101
Number of Sequences: 27780
Number of extensions: 440500
Number of successful extensions: 1312
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1312
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)