Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n07
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.6  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.0  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   8.0  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 718 VVSPV-LNQWERLLMESPASIILTASSKVQ 804
           ++SP+ LN+   +L  SPA IIL   SK +
Sbjct: 10  LLSPLTLNRITHILANSPAIIILGQDSKAK 39


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +1

Query: 718 VVSPV-LNQWERLLMESPASIILTASSKVQ 804
           ++SP+ LN+   +L  SPA IIL   SK +
Sbjct: 48  LLSPLTLNRITHILANSPAIIILGQDSKAK 77


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 679 ICSNTLRTLSSMPVVSPVLNQWERLLME 762
           ICS  +  LS   +  PV   WER  ++
Sbjct: 167 ICSTPIGNLSHALLKDPVKEFWERRTLQ 194


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 679 ICSNTLRTLSSMPVVSPVLNQWERLLME 762
           ICS  +  LS   +  PV   WER  ++
Sbjct: 220 ICSTPIGNLSHALLKDPVKEFWERRTLQ 247


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
 Frame = -1

Query: 461 VITYVHRIMHRSVPAELVPRLSEAVKKFIRLSKSDYDDRLHV-DESY--NCPRVIAEMYG 291
           V  Y H   HR          S +    + ++     DR  + +ESY     R I     
Sbjct: 25  VAGYKHSRRHRDFTVAESYDASSSNSDSLSMTIPPSIDRSSIHEESYLAESSRSIDPCAS 84

Query: 290 RFCGIGKE 267
           ++CGIGKE
Sbjct: 85  KYCGIGKE 92


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 128 DLKDVFDLLHAHSMSDKDKNSLMDLLC 48
           D+K + + ++A+  +DK +N L  ++C
Sbjct: 111 DVKMLSECINANKSTDKCENGLNFIIC 137


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,693
Number of Sequences: 438
Number of extensions: 5173
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)