Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n06
         (844 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   3.3  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    27   4.4  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   7.7  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   7.7  
SPBC16A3.12c |||triglyceride lipase-cholesterol esterase |Schizo...    26   7.7  

>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/35 (25%), Positives = 22/35 (62%)
 Frame = -2

Query: 666 EIYPSINLVDLSYLARERFFYQYIFPVSLEHTTEV 562
           +++P I  + L+++ R  F +  IFP  ++H++ +
Sbjct: 568 QLWPYIIAMILNFIVRSSFIFYCIFPNHIQHSSGI 602


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = -2

Query: 555  LKIDDHNCKVFEIIRRIIRNHKEPNERIQTIDLSTT 448
            + I   +C++    RR + NH +P+ + + ++LS T
Sbjct: 1101 IDIGSIHCEISNFARRPVHNHIDPDIQSKVLNLSNT 1136


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = -2

Query: 636 LSYLARERFFYQYIFPVSLEHTTEVKELKIDDHNCKVFEI---IRRIIRNHKEPN 481
           ++Y+     FY+  +  SL +     E+ +  HN   F++   +R+ IR   +PN
Sbjct: 706 IAYIYTYDEFYKDDYATSLPNVVYTSEVLLSKHNDSAFKVWPKLRKNIRKITKPN 760


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 15/61 (24%), Positives = 33/61 (54%)
 Frame = -2

Query: 636 LSYLARERFFYQYIFPVSLEHTTEVKELKIDDHNCKVFEIIRRIIRNHKEPNERIQTIDL 457
           L+ L ++ + Y     + L+H        +++H  + FE + +I  +  +P++ +QT+DL
Sbjct: 49  LTVLEKKLYEYWESLVLKLDHYVAAA---LENHE-QSFEELEKITASLYQPDDNLQTLDL 104

Query: 456 S 454
           S
Sbjct: 105 S 105


>SPBC16A3.12c |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 443

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/32 (28%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -2

Query: 129 CGFTNVYHFPEYSKLVYYSKAIKN--FEMHNE 40
           CG+ ++Y F     +V++ + IKN  F+++++
Sbjct: 312 CGYAHLYSFSSVKSVVHWLQIIKNCTFQLYDD 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,467,379
Number of Sequences: 5004
Number of extensions: 73312
Number of successful extensions: 215
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)