Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n06
         (844 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0490 + 22672241-22674679                                         29   3.5  
07_01_0639 - 4785446-4786186,4786429-4786656,4786727-4786872,478...    29   6.1  
06_01_0558 - 3968211-3969475,3970198-3970266,3970374-3970529,397...    29   6.1  
05_05_0079 + 22239238-22239395,22240837-22240877,22240955-222410...    29   6.1  
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855...    29   6.1  

>01_05_0490 + 22672241-22674679
          Length = 812

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 376 GSGAHASVALQHYIGVRFSENETAGGAKIDRLNALVGLFVI 498
           G+G  AS A   Y+ +   EN  AGGAK+  L  L  L V+
Sbjct: 14  GAGPGASGATTSYMSIDGEENGGAGGAKVWVLVLLFSLIVL 54


>07_01_0639 -
           4785446-4786186,4786429-4786656,4786727-4786872,
           4786986-4787186,4787256-4787432,4787741-4788359
          Length = 703

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 494 TKSPTSAFKRSILAPPAVSFSEKRTPI*CCSATEACAPD 378
           T+SPTS     + +PPA+ F   R+   C S T +  P+
Sbjct: 156 TQSPTSPLFTVLSSPPALVFRSSRSSRGCWSTTASSFPN 194


>06_01_0558 -
           3968211-3969475,3970198-3970266,3970374-3970529,
           3971075-3971405
          Length = 606

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 654 SINLVDLSYLARERFFYQYIFPVSLEHTTEVKELKIDDHN 535
           +I   +LSYL   + F+Q IFP ++ H   +  L +  +N
Sbjct: 389 NITFPNLSYLNLSKNFFQGIFPSAVSHLENLSTLDLSYNN 428


>05_05_0079 +
           22239238-22239395,22240837-22240877,22240955-22241033,
           22241570-22241656,22241749-22241837,22241933-22242004,
           22242094-22242186,22242339-22242427
          Length = 235

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 770 CMLWFTSKSRWTILTA*TYAVKNAIYITTFQRPRTK 663
           CMLW TS S  T+L A   A+   +   +F+ P  K
Sbjct: 154 CMLWLTSCSLLTVLWALLIAIFATLLHASFRTPNLK 189


>01_06_1664 -
           38984545-38984615,38984706-38984802,38985362-38985523,
           38985736-38985825,38986125-38986226,38986373-38986446,
           38986587-38986615,38986766-38986989
          Length = 282

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
 Frame = -3

Query: 410 CCSATEACAPDPTRRTTLIVLYFKSQAK*WP-LCKTTDFRVSKEPCLPLLKSKNLPRYW 237
           CC+    C  +P +  T+  L+       WP  C+ T F + K   LPL     L +YW
Sbjct: 67  CCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCRHTSFDMDK--ILPL--KPTLEKYW 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,796,122
Number of Sequences: 37544
Number of extensions: 450349
Number of successful extensions: 1036
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)