Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n06
         (844 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022360-1|AAY54776.1|  319|Drosophila melanogaster IP11482p pro...    31   1.5  
AF495537-1|AAM18059.1|  527|Drosophila melanogaster prolyl 4-hyd...    31   1.5  
AE014297-4609|AAG22175.1|  527|Drosophila melanogaster CG1546-PA...    31   1.5  
AE014134-437|AAF51232.1|  319|Drosophila melanogaster CG9962-PA ...    31   1.5  

>BT022360-1|AAY54776.1|  319|Drosophila melanogaster IP11482p
           protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 22/79 (27%), Positives = 40/79 (50%)
 Frame = +1

Query: 337 LLKYKTINVVRRVGSGAHASVALQHYIGVRFSENETAGGAKIDRLNALVGLFVISNYAPN 516
           +L+  +I V+R++GSG+   +    ++G   S    A   K++R NA      I +   N
Sbjct: 9   MLRINSIMVIRKLGSGSFGDIYEAKHMG---SGLHVA--LKVERKNAGQSHLSIESTVYN 63

Query: 517 YFKHFAIVIVNFQFFNFRR 573
             +H   + + +QFF+ RR
Sbjct: 64  LLRHGMGIPMTYQFFSNRR 82


>AF495537-1|AAM18059.1|  527|Drosophila melanogaster prolyl
           4-hydroxylase alpha-relatedprotein PH4[alpha]SG2
           protein.
          Length = 527

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 612 FFYQYIFPVSLEHTTEVKELKIDD---HNCKVFEIIRRIIRN 496
           F+ +Y+  +  EH     +LK+DD   H    F +I+R++R+
Sbjct: 59  FYRRYVEQIKREHEWATSQLKLDDYLGHPLHAFRLIKRLVRD 100


>AE014297-4609|AAG22175.1|  527|Drosophila melanogaster CG1546-PA,
           isoform A protein.
          Length = 527

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 612 FFYQYIFPVSLEHTTEVKELKIDD---HNCKVFEIIRRIIRN 496
           F+ +Y+  +  EH     +LK+DD   H    F +I+R++R+
Sbjct: 59  FYRRYVEQIKREHEWATSQLKLDDYLGHPLHAFRLIKRLVRD 100


>AE014134-437|AAF51232.1|  319|Drosophila melanogaster CG9962-PA
           protein.
          Length = 319

 Score = 31.5 bits (68), Expect = 1.5
 Identities = 22/79 (27%), Positives = 40/79 (50%)
 Frame = +1

Query: 337 LLKYKTINVVRRVGSGAHASVALQHYIGVRFSENETAGGAKIDRLNALVGLFVISNYAPN 516
           +L+  +I V+R++GSG+   +    ++G   S    A   K++R NA      I +   N
Sbjct: 9   MLRINSIMVIRKLGSGSFGDIYEAKHMG---SGLHVA--LKVERKNAGQSHLSIESTVYN 63

Query: 517 YFKHFAIVIVNFQFFNFRR 573
             +H   + + +QFF+ RR
Sbjct: 64  LLRHGMGIPMTYQFFSNRR 82


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,089,570
Number of Sequences: 53049
Number of extensions: 789006
Number of successful extensions: 1968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1967
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)