Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n06
         (844 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   0.66 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.5  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   6.2  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.2  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   6.2  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   6.2  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   6.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   8.1  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.4 bits (53), Expect = 0.66
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 217 KRDCAAVQYLGKFFDFNSGKHGSFDTRKSVVLQSGHH 327
           K +   V+Y  K+FD+N G     D ++   +QSG +
Sbjct: 28  KANIFQVKYQWKYFDYNFGS----DEKRQAAIQSGEY 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
 Frame = +1

Query: 286 FDTRKSVVLQS---GHHFAWLLKYKTI 357
           F   KSV  Q+    +H+ WL K KTI
Sbjct: 125 FKNAKSVTFQTMTIPNHYLWLYKDKTI 151


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 123 FTNVYHFPEYSKLVYYSKAIKNFE 52
           ++N  ++  Y+K +YY   I N E
Sbjct: 91  YSNYNNYNNYNKKLYYKNYIINIE 114


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 137 VPNAGLPTFIIFLNTLNLCTILKRS 63
           +P + L TF+ + + +NL  + +RS
Sbjct: 303 IPESDLVTFLCYPSVMNLDDLTRRS 327


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -2

Query: 111 YHFPEYSKLVYYSKAIKNFE 52
           Y++  Y+K +YY   I N E
Sbjct: 331 YNYNNYNKKLYYKNYIINIE 350


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -3

Query: 137 VPNAGLPTFIIFLNTLNLCTILKRS 63
           +P + L TF+ + + +NL  + +RS
Sbjct: 303 IPESDLVTFLCYPSVMNLDDLTRRS 327


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = -2

Query: 105 FPEYSKLVYYSK-AIKNFEMHNEMIIYYDLKM 13
           F E   + Y S+ AI  F +H   I+Y DLK+
Sbjct: 82  FKEPVAVFYASEIAIGLFFLHGRGIVYRDLKL 113


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +3

Query: 690 DIDSIFDSICLCGQNRPTAFRCEPQHTKTMRACCL*IYNC 809
           DI++IF    +   N+   ++ + ++ K  R+  L  YNC
Sbjct: 657 DIENIFKYGYVSHANQRNMYKLDLKNMKYTRSADLSSYNC 696


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 236,748
Number of Sequences: 438
Number of extensions: 5233
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)