Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n04
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    28   1.9  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    27   2.5  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    27   4.4  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    26   7.6  
SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces pomb...    26   7.6  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 522 NHHFCYGYFFINFAKSMISRRLPNFINHNLKKKSVTISV 406
           +HHF YGYF   F  ++I    P++IN    K+ V   V
Sbjct: 492 DHHFHYGYFV--FTAAVIGHIDPDWINTGNNKEWVNFLV 528


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 6   SNFLRSIT*IKQKCLSNEMTINVLTMPDAYNGK 104
           SNF  S    K  CL+N +T+N L  P   NG+
Sbjct: 393 SNFCSS----KDNCLTNRLTLNCLDTPSDENGE 421


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +3

Query: 18  RSIT*IKQKCLSNEMTINVLTMPDAYNGK 104
           + +T +K + +SN+  IN++ +PD  N K
Sbjct: 527 KRLTVVKNQAVSNDDNINMVNIPDGSNKK 555


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -1

Query: 595 RVYSVLLVQSEFYLEISNVCSLDFKPSFLL 506
           ++Y   L++S  Y+  S +C  D KP  LL
Sbjct: 135 KLYIYQLLRSLAYIHASGICHRDIKPQNLL 164


>SPBC776.03 |||homoserine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 436 FKKKIGYHFSIWTPNNKK 383
           F   + Y F++W+PN KK
Sbjct: 180 FSGTLSYIFNVWSPNGKK 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,136,156
Number of Sequences: 5004
Number of extensions: 61067
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)