Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n03
         (735 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    30   0.39 
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    29   0.91 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    27   2.1  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   3.7  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   4.8  

>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +1

Query: 208 FYSWYARVLKQNRTLPDCLS*NRYSTHILNVHNLNRF 318
           FY  + + L  N++ P CLS ++ +  ++  +N +RF
Sbjct: 577 FYQSFQKALSMNKSQPSCLSFSKLNDFVVFFNNYSRF 613


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 11/12 (91%), Positives = 11/12 (91%)
 Frame = +2

Query: 122  WWLFSKLCNLLN 157
            W LFSKLCNLLN
Sbjct: 1107 WGLFSKLCNLLN 1118


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -1

Query: 549 AFTWSNSNKIWWRFLCRATKRSATKNCLRKTTRTWRLPWKTQTASATNAPTSDG--FRSK 376
           A + SN+ + +W  +  A K  ++        RTW   WK++T      PTSDG   RS 
Sbjct: 400 ALSSSNTREKYWDNVLTAHKNDSS-------ARTWN--WKSKTLGQHVLPTSDGTSVRSV 450

Query: 375 CTA 367
           C +
Sbjct: 451 CVS 453


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 171 HTLIMFKRLQSLLKSHHFRNDAKTLAYFGYYLTHTGTLKTF 49
           H L+       +L  H   ND  T+  + Y LTH+GTL+TF
Sbjct: 298 HNLLSLCSPSGVLFGH---NDIDTI--YVYILTHSGTLETF 333


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 262 NSREACDSVLKREHTNCKSFNLKHKNFDNPTYFDYV*KVAKFAKE 128
           N+RE   S+ + + T+C SF L+H  F+  T+  Y   + K  K+
Sbjct: 565 NTREVNSSIEELKITDCLSFLLEHNIFN--TFLVYNEGIVKLNKD 607


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,838
Number of Sequences: 5004
Number of extensions: 61685
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)