Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc12n03
         (735 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT022185-1|AAY51579.1|  442|Drosophila melanogaster IP01211p pro...    29   5.0  
AY071497-1|AAL49119.1| 1324|Drosophila melanogaster RE55745p pro...    29   5.0  
AE014296-2071|AAF49978.2| 1324|Drosophila melanogaster CG6947-PA...    29   5.0  
AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-P...    29   8.7  

>BT022185-1|AAY51579.1|  442|Drosophila melanogaster IP01211p
           protein.
          Length = 442

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 597 CASVLTISNWGVPFLLTNSAVCFTRYLRLPFPNSTRICS 713
           C S LT+++ G P   TNS       L LP  NST +CS
Sbjct: 249 CRSPLTVNSIGRPIRQTNSP----SPLNLPMVNSTNLCS 283


>AY071497-1|AAL49119.1| 1324|Drosophila melanogaster RE55745p protein.
          Length = 1324

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 484  CNKELFTENNAYVAFAVENSNCERYQCADKRRLSFKMHSC 365
            CN     + + +  FA EN+N     C D +R+S   H C
Sbjct: 1242 CNLRECLKRSQFEPFAAENTNSGFCSCDDLQRVSVTYHPC 1281


>AE014296-2071|AAF49978.2| 1324|Drosophila melanogaster CG6947-PA
            protein.
          Length = 1324

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 484  CNKELFTENNAYVAFAVENSNCERYQCADKRRLSFKMHSC 365
            CN     + + +  FA EN+N     C D +R+S   H C
Sbjct: 1242 CNLRECLKRSQFEPFAAENTNSGFCSCDDLQRVSVTYHPC 1281


>AE014134-756|AAN10358.4| 23015|Drosophila melanogaster CG33196-PB
             protein.
          Length = 23015

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 337   RFLDHYS-CDCSCAF*TKAVA-CRRIGSARSLSFPRQTPRTRCFP 465
             R ++H   C C   F   A++ C+RI  A +   P +TPR  C P
Sbjct: 17499 RVINHSPHCSCLPGFTGDAISGCQRIPPAITHDAPNETPRDPCVP 17543


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,511,421
Number of Sequences: 53049
Number of extensions: 722331
Number of successful extensions: 2271
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2270
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3314233461
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)